PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00270g01116.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C2H2
Protein Properties Length: 460aa    MW: 51333.9 Da    PI: 9.8148
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00270g01116.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-054365123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              + C++C+k F r  nL+ H r H
  Peaxi162Scf00270g01116.1 43 FICEICNKGFQRDQNLQLHRRGH 65
                              89*******************88 PP
2zf-C2H2120.00064119141123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               +kC++C+k +  +s+ k H + +
  Peaxi162Scf00270g01116.1 119 WKCEKCSKKYAVQSDWKAHSKIC 141
                               58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-54265IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.44E-74265No hitNo description
SMARTSM003550.0224365IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8454365IPR007087Zinc finger, C2H2
PfamPF121715.4E-54365IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
SMARTSM0035510084114IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-4107140IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.44E-7114139No hitNo description
SMARTSM00355140119139IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MFYIFKFYQS HFFSFFGFSF TKTDPDAEVI ALSPKSLMAT NRFICEICNK GFQRDQNLQL  60
HRRGHNLPWK LKQRTNKEVK KKVYICPEKT CVHHDPSRAL GDLTGIKKHF SRKHGEKKWK  120
CEKCSKKYAV QSDWKAHSKI CGTREYKCDC GTLFSRKDSF ITHRAFCDAL AEESARFTSV  180
PTAVNLNLRN QLLNGGISNH LQHSGNSQFG SLFRPELMGL GLDPSSQLNL DGQKPRLPLW  240
LDNANSGKQC NFCNYPNDFS SAPSSTTNSL LVQMTPQNSN NQWFMNGGGA NSSSMPRVLK  300
EEEENKRNLS EIYFQSNQPE VTPAMPQMSA TALLQKAAQI GSTTSSNSAN FNGFGLMGSS  360
NLSSLSNFNS FKNQGQGQLV AGDHQNLSNL IMNSSSSAST SLDPLMMMQN KGKQVNIPSG  420
NEGIIDQGNF TRDFLGVGGN KNRPFLQQRE LAKFGNSGIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-37115180368Zinc finger protein JACKDAW
5b3h_F6e-37115180368Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754501e-126HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019234944.10.0PREDICTED: protein indeterminate-domain 9-like isoform X1
TrEMBLA0A1J6KXM90.0A0A1J6KXM9_NICAT; Protein indeterminate-domain 9
STRINGXP_009612448.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.14e-98C2H2-like zinc finger protein