PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00252g01219.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 202aa    MW: 23150.6 Da    PI: 10.1311
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00252g01219.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.12.9e-171121871598
                               -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                        B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                               +l lp +f++++   ++++ t+tl de+g++W   +  +k++    l++GWk+F+ +++L +gD +vF+l++ ++f  +v ++r
  Peaxi162Scf00252g01219.1 112 ILGLPSTFCRKNL--PRRDDTITLIDETGEEWPTVYLAQKSG----LSGGWKKFAVDHDLADGDAIVFHLIRPTKF--KVYIIR 187
                               588******9995..346679***************555555....9************************97777..888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.32498189IPR003340B3 DNA binding domain
SMARTSM010193.0E-18102189IPR003340B3 DNA binding domain
SuperFamilySSF1019361.39E-20111189IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-18111188IPR015300DNA-binding pseudobarrel domain
PfamPF023623.3E-14113187IPR003340B3 DNA binding domain
CDDcd100177.82E-21113187No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MVVSTKKVKY EELRQQRLEE NKKRMEQLNL PLLSQALKNS SSPRPSPMKK VKPRILRTEL  60
VVYYEKVMIP RRVATPRKRD LSNRVYASDE QRETAIEKAE KLEASLGSDY PILGLPSTFC  120
RKNLPRRDDT ITLIDETGEE WPTVYLAQKS GLSGGWKKFA VDHDLADGDA IVFHLIRPTK  180
FKVYIIRVNN VSESASSETS TN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783454.11e-114PREDICTED: B3 domain-containing protein At5g42700-like
RefseqXP_016434462.11e-114PREDICTED: B3 domain-containing protein At5g42700-like
SwissprotQ9FMZ41e-60Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A1S3X3J51e-112A0A1S3X3J5_TOBAC; B3 domain-containing protein At5g42700-like
TrEMBLA0A1U7X9501e-112A0A1U7X950_NICSY; B3 domain-containing protein At5g42700-like
STRINGXP_009783454.11e-113(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16282371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.15e-63B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]