PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00249g00025.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | FAR1 | ||||||||
Protein Properties | Length: 504aa MW: 57697.8 Da PI: 9.9085 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 83.5 | 3.4e-26 | 48 | 134 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY +YA++ GFsvr+ + ks+++++i+ ++fvCskeg+r++++ k ++r++ tr gCk l v+k++d+kw v +l+++H Peaxi162Scf00249g00025.1 48 NFYLDYAHRNGFSVRRGRVAKSRKDKSIIGQEFVCSKEGFRSKKNLK---SNRPQDITREGCKVLLYVSKKEDAKWAVCRLVSNH 129 6*****************************************98877...999******************************** PP FAR1 86 nHela 90 nHela Peaxi162Scf00249g00025.1 130 NHELA 134 ***97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.9E-23 | 48 | 134 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 11.251 | 252 | 288 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 3.4E-8 | 252 | 286 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.0E-5 | 263 | 290 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 504 aa Download sequence Send to blast |
MENSNIDEQN EIGSDMDGTT PFVPSSGVEN HKDLYIGMEF SSLDDSFNFY LDYAHRNGFS 60 VRRGRVAKSR KDKSIIGQEF VCSKEGFRSK KNLKSNRPQD ITREGCKVLL YVSKKEDAKW 120 AVCRLVSNHN HELATPNSQR FLRSKRKKSE AQKNLIDLLD DSGVRPGKIA SAIDARYDKI 180 HEKDFKTKSS MPKLKTLYPM ENEAAKAYTR KVFNIFQEEL LLSQKFVSEK VEVKDGINIY 240 KVHEFGRKTP TYIVSLDLAS KSATCSCHKF EFMGILCRHV LMVFINKQIH SLPSCYLLDR 300 WTRNATREKV DDATNETKKL KPALLFNNIM MQSIGVSERA TRSGKHYQLA HQRLLQLCEE 360 LDELPYEFEK DCVEGNQVSE SNLELNSCEK SHRITLVDPP RAATKGRPRS LRMKGALESK 420 TKKNPSQRQK GETKNTKPKS KEKSLNHFHN FTTDKLRTQV LHIPTHSRVL SIYTSSGFNE 480 SSFKSVPTKP PSVMGNKIED LELQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025883762.1 | 1e-112 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_025886302.1 | 1e-109 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2G3CXF4 | 1e-167 | A0A2G3CXF4_CAPCH; Uncharacterized protein | ||||
STRING | Solyc01g110070.1.1 | 1e-109 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA645 | 8 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 1e-28 | FAR1-related sequence 3 |