PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00245g00411.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | B3 | ||||||||
Protein Properties | Length: 166aa MW: 18430.1 Da PI: 5.0346 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.1 | 2.1e-15 | 41 | 129 | 1 | 94 |
EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+ +l++s+v ++ l lp k + + +++++ ++l + sg++W++ + +++s r l++GW++Fv++++L+ gD +vF+l Peaxi162Scf00245g00411.1 41 FDLILSKSHVVSNhTGLHLPEKICPKL---PPGEVPVVLITNSGKTWDMIC--TGGSTR-RLKNGWQNFVDDKNLRIGDGLVFEL 119 566778888877756799****99766...345677***************..888877.69**********************9 PP -SSSEE..EE CS B3 85 dgrsefelvv 94 ++ s+++ ++ Peaxi162Scf00245g00411.1 120 IECSTAKIKF 129 9655554444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.16E-17 | 37 | 134 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-15 | 38 | 135 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.67E-17 | 39 | 135 | No hit | No description |
SMART | SM01019 | 9.2E-9 | 41 | 133 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.773 | 42 | 137 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-12 | 44 | 129 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MFKTLMLYYK GPAKNPKIGK SVANDEDEDD RSCPLTGKPY FDLILSKSHV VSNHTGLHLP 60 EKICPKLPPG EVPVVLITNS GKTWDMICTG GSTRRLKNGW QNFVDDKNLR IGDGLVFELI 120 ECSTAKIKFK MQILRGDFPS ELLSDSDSEN SDCDEDGTAE NPILII |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018630850.1 | 2e-58 | PREDICTED: B3 domain-containing protein Os04g0386900-like | ||||
TrEMBL | A0A1U7Y1E4 | 8e-55 | A0A1U7Y1E4_NICSY; B3 domain-containing protein Os04g0386900-like | ||||
STRING | XP_009617043.1 | 6e-60 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1819 | 21 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-07 | B3 family protein |