PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00237g01510.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

HD-ZIP

Protein Properties

Length: 329aa MW: 36980.3 Da PI: 4.2957

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00237g01510.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.2	6.7e-19	60	113	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++++ +++ +LA++lgL+ rqV vWFqNrRa++k Peaxi162Scf00237g01510.1 60 KKRRLSVEQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWK 113 56689************************************************9 PP
2	HD-ZIP_I/II	109.8	1.9e-35	59	129	1	69
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyea..Lkra 69 ekkrrls eqvk+LE++Fe e+kLep+rKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++ Peaxi162Scf00237g01510.1 59 EKKRRLSVEQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYNIneLKSK 129 69************************************************************974226655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.63E-19	47	117	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.378	55	115	IPR001356	Homeobox domain
SMART	SM00389	5.0E-18	58	119	IPR001356	Homeobox domain
Pfam	PF00046	5.0E-16	60	113	IPR001356	Homeobox domain
CDD	cd00086	2.63E-17	60	116	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.2E-20	62	123	IPR009057	Homeodomain-like
PRINTS	PR00031	9.5E-6	86	95	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	90	113	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.5E-6	95	111	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MKRPGSSDSL GALMSMCPST TDEQNHGNNN HVYLTRDFQS MLEGLDEEGC VEESGHVSEK 60 KRRLSVEQVK ALEKNFEVEN KLEPDRKVKL AQELGLQPRQ VAVWFQNRRA RWKTKQLERD 120 YNINELKSKV YVENGESRGV AVKEETMECE SDDKVIEQSK HLVFGKCDEE EEDDNDEDEE 180 AEINFEQSFK GGGMLNAAAA IASTINFAHD FKDGSSDSDN SSAILNEDNS PNAAISSSGA 240 FLISNNGCES GVGSSSSLNL CFQFTESTSS KSSLGDVHKA NNYYYQPQFV KMEEHNFFNG 300 EESCSTLFSD EQAPTLQWYC PEDWNWKDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	115	RRARWKTKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY101610	5e-85	AY101610.1 Nicotiana tabacum homeodomain protein Hfi22 (Hfi22) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009777009.1	1e-142	PREDICTED: homeobox-leucine zipper protein ATHB-6-like
Refseq	XP_016502437.1	1e-142	PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBL	A0A1S4CMF7	1e-140	A0A1S4CMF7_TOBAC; homeobox-leucine zipper protein ATHB-6-like
TrEMBL	A0A1U7WQP6	1e-140	A0A1U7WQP6_NICSY; homeobox-leucine zipper protein ATHB-6-like
STRING	XP_009777009.1	1e-141	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2718	24	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65310.1	1e-49	homeobox protein 5