PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00235g00216.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | FAR1 | ||||||||
Protein Properties | Length: 224aa MW: 25443.5 Da PI: 8.2318 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 95.5 | 6.2e-30 | 54 | 141 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +Yn+YA +vGF vr+++ +ks rnge ++r++vC+keg+++++ ++ ++++++r++tr gCka++ vkke++gkw+v+kl++eHn Peaxi162Scf00235g00216.1 54 YYNAYAVRVGFIVRVDAFRKSMRNGERVWRRLVCNKEGFSKRKGNQ-SDKKKRRSVTREGCKAMIIVKKEQSGKWVVAKLVKEHN 137 8*****************************************9999.99999********************************* PP FAR1 87 Hela 90 H+l+ Peaxi162Scf00235g00216.1 138 HPLV 141 **97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.7E-28 | 54 | 141 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MAVDENSNAT DDEEMVESSS GKELTSNDGE AEGRSNMEPY EGMEFESEEA AKAYYNAYAV 60 RVGFIVRVDA FRKSMRNGER VWRRLVCNKE GFSKRKGNQS DKKKRRSVTR EGCKAMIIVK 120 KEQSGKWVVA KLVKEHNHPL VAAPANTHRG AIFSQTPDEK DVKIRELTAE LQKERKRSAA 180 LQEQLDFVLK DMEDHSEQLT RHINDIVHSV RELDSRKVVS SNGG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 101 | 105 | KKKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016450609.1 | 1e-123 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2 | ||||
Refseq | XP_016450610.1 | 1e-123 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2 | ||||
TrEMBL | A0A1S3YEI7 | 1e-121 | A0A1S3YEI7_TOBAC; protein FAR1-RELATED SEQUENCE 5-like isoform X2 | ||||
STRING | XP_009802876.1 | 1e-122 | (Nicotiana sylvestris) | ||||
STRING | XP_009620544.1 | 1e-122 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12791 | 15 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 2e-74 | FAR1 family protein |