PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00235g00015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | FAR1 | ||||||||
Protein Properties | Length: 220aa MW: 25499.2 Da PI: 6.8599 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 86.7 | 3.5e-27 | 61 | 150 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY++YA++vGF +r+++ ++s+ +++i +r++ C+k+g++ + ++++ r+tr++ r gCka++ vk +k++kw+vt++++eH Peaxi162Scf00235g00015.1 61 EFYDDYARRVGFIMRIDQCRRSEVDKRILSRRLSCNKQGYHVKMNNHNGPPRKTRTSPREGCKAMMLVKINKSDKWVVTRFVKEH 145 6********************************************999************************************* PP FAR1 86 nHela 90 +H+l+ Peaxi162Scf00235g00015.1 146 THPLV 150 ***96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.4E-25 | 61 | 150 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
SHVSMVLFDT SKHCLVVTVD LEAGAASIDC TVESWYVACE DNVIPESFIG MEFESKEAAK 60 EFYDDYARRV GFIMRIDQCR RSEVDKRILS RRLSCNKQGY HVKMNNHNGP PRKTRTSPRE 120 GCKAMMLVKI NKSDKWVVTR FVKEHTHPLV VSVYSSHNAM DKKDRRIQEL VMELERQDDL 180 YKEQLCTLLE NVEQQMELLS NKIEVAVNNV KEIEAEVQKP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016455342.1 | 1e-123 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_016455343.1 | 1e-123 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A1S3YTJ7 | 1e-122 | A0A1S3YTJ7_TOBAC; protein FAR1-RELATED SEQUENCE 5-like | ||||
STRING | XP_009626414.1 | 1e-122 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11602 | 20 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 9e-59 | FAR1 family protein |