PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00234g00222.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

Protein Properties

Length: 285aa MW: 33090.7 Da PI: 10.1076

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00234g00222.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	31.6	2.8e-10	27	106	13	96
TT-EE--HHH.HTT---..--SEEEE.EETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 13 sgrlvlpkkfaeehggkkeesktltl.edesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 + +++p f++eh++ kt l +d g+ We k+ +r +s ++ ++ W +Fv ++L+ gD+++F l+++s+f v v Peaxi162Scf00234g00222.1 27 MNKIIMPPAFIKEHKKM--LAKTYLLqTDVAGKLWEAKI-VRENSYFFICEGEWPQFVLHHKLELGDILLFFLIDKSTF--QVIV 106 344899******644..4444444056******.6888889999*********************998888..5544 PP
2	B3	43.8	4.6e-14	195	268	14	90
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 +++p +fa+ g+++ + +tl +e+g++W+v + + +r+ +++GW F ++n++ gD+++Fkl++ +++ Peaxi162Scf00234g00222.1 195 ISMTIPMSFARWTGIINMK--RMTLVNEKGKKWQVDI--VHRLRRVQIREGWVAFRRDNNIYCGDTCIFKLIKGqHGG 268 4599****999988555..79999*******..88888899*********************99653544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	6.47E-16	11	108	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.7E-15	12	110	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.53E-11	15	107	No hit	No description
SMART	SM01019	6.9E-5	17	110	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.4E-8	26	106	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.28	28	110	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	5.3E-17	179	265	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	8.2E-17	179	274	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.83E-10	183	264	No hit	No description
SMART	SM01019	5.6E-7	185	281	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.3E-12	196	266	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.476	197	279	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MEKIPNMLLD PDKHPSFCKL LFKQGFMNKI IMPPAFIKEH KKMLAKTYLL QTDVAGKLWE 60 AKIVRENSYF FICEGEWPQF VLHHKLELGD ILLFFLIDKS TFQVIVFTQK TYKSFCERQL 120 FEELSSSSEE EQKIGTRKAK KVKTAPKKSS GIAEEEEAGT GSDENGLIKT LRYSVVNLNN 180 KDPYYETVVR KAHSISMTIP MSFARWTGII NMKRMTLVNE KGKKWQVDIV HRLRRVQIRE 240 GWVAFRRDNN IYCGDTCIFK LIKGQHGGVS NVLHVQKIPK FNSLH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009622139.2	1e-116	PREDICTED: B3 domain-containing protein At5g18000-like
TrEMBL	A0A1U8FRS9	1e-112	A0A1U8FRS9_CAPAN; B3 domain-containing protein REM9-like
STRING	XP_009780425.1	1e-112	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4888	13	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24700.1	2e-13	B3 family protein