PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00234g00218.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 272aa    MW: 31978.4 Da    PI: 10.1198
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00234g00218.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.11.6e-131862631596
                               -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                        B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                                +++  +fa++ g++  +  ++tl +e+g++W+v+l   +  + + +++GW+ F k n+++ gD+++F+l+++++++ v++v
  Peaxi162Scf00234g00218.1 186 AMTILMSFARRTGIIDMN--KMTLVNENGKEWRVEL--LQVVRYIRISRGWSAFRKYNNICYGDTCLFTLIRHHGGSNVLRV 263
                               489999*****9888544..79**************..77777788*************************98777666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.3E-12597IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-12696IPR015300DNA-binding pseudobarrel domain
CDDcd100175.54E-7995No hitNo description
SMARTSM010190.009111110IPR003340B3 DNA binding domain
PROSITE profilePS508639.54522104IPR003340B3 DNA binding domain
SuperFamilySSF1019361.79E-15169255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-15169264IPR015300DNA-binding pseudobarrel domain
CDDcd100172.34E-8174256No hitNo description
SMARTSM010195.6E-9175269IPR003340B3 DNA binding domain
PfamPF023627.4E-11186262IPR003340B3 DNA binding domain
PROSITE profilePS5086310.687187269IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MQVDPNKHPS FCKLLFTEGF MNKILMPPSF VKEHKKMLAK TCLLKTNVAE MLWEAKIVRE  60
KSDYFICEGE WPQFVVHHKL ELGDILLFFL MDKSMFQSTR KKVIKTFVGG NYTRNLAVAP  120
PKNKRTIILD LQENLRKLKR SRNNHQDETK SEEEEYGQKK TRFSMVNLDD EDTCYELVVK  180
KSHLYAMTIL MSFARRTGII DMNKMTLVNE NGKEWRVELL QVVRYIRISR GWSAFRKYNN  240
ICYGDTCLFT LIRHHGGSNV LRVQKVPKTN SL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754413e-52HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016561891.12e-88PREDICTED: B3 domain-containing protein REM9-like
TrEMBLA0A1U8FRS95e-87A0A1U8FRS9_CAPAN; B3 domain-containing protein REM9-like
STRINGSolyc02g065340.1.11e-78(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48881327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.14e-14B3 family protein