PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00234g00019.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 780aa    MW: 88138.3 Da    PI: 10.0314
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00234g00019.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3375.9e-12341131398
                               TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                        B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                                +rl +p +fa+++ ++ +++    +  +sg++Wev++    + g+++lt+GW++F +   +++g f++F +dg s+f  +v +f
  Peaxi162Scf00234g00019.1  34 CSRLGIPEHFASRYCKNMQNP--AYVVVPSGEVWEVEV--VHSEGQIWLTEGWQDFTDYYSIDSGYFLMFGYDGFSQF--NVIIF 112
                               4689**********5554454..8999***********..999999**************************988888..77777 PP

                               - CS
                        B3  98 r 98 
                               +
  Peaxi162Scf00234g00019.1 113 D 113
                               6 PP
2B343.84.7e-14257334588
                               -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                        B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                               + ps+vl+  +l+++ kfa ++ +++++  +l+l+ +   sW+vk+++  +     +   Wk Fv++n+Lk+gD++vF++++ +
  Peaxi162Scf00234g00019.1 257 MQPSYVLSPFNLSVSLKFAMKYFLENRG--DLVLRVPGKGSWSVKCNF--GTANAKI--SWKAFVDDNKLKVGDVCVFEVIKGT 334
                               679*******************888666..7***************55..4433334..5*******************88643 PP
3B3581.7e-18517608499
                               E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                        B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                                + ps+v+k+ +l++  +fa+++  k ++s  ltl+ +   sW+vk++ r ++ + +l+ GWkeFv +n+Lk+gD++vF++++ +
  Peaxi162Scf00234g00019.1 517 FMQPSYVSKKYILSIGLTFAKKYFRK-NCS-NLTLRVPGRGSWSVKCCLRTSDTQ-ILS-GWKEFVLDNKLKSGDVCVFEVIKCT 597
                               6789*******************655.465.9***************76666655.455.********************98778 PP

                               EE..EEEEE-S CS
                        B3  89 efelvvkvfrk 99 
                               e +  v++fr+
  Peaxi162Scf00234g00019.1 598 ELSIDVTIFRA 608
                               88888888875 PP
4B347.92.4e-157037742297
                               H.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                        B3  22 faeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                                a+++   ++++ +l+l+ +s r+W vk+  + + +   l++GWkeFv +n++k+gD++vF+l++rs+  ++v +f
  Peaxi162Scf00234g00019.1 703 RARKFF--PTKHSDLVLQVSSKRTWAVKC--NLGTQNAKLSSGWKEFVLDNNIKVGDVCVFELVNRSKLLFNVIIF 774
                               455554..345558***************..99999999************************9988886666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-1718115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.2E-1721122IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.96922115IPR003340B3 DNA binding domain
CDDcd100171.85E-1122113No hitNo description
SMARTSM010191.9E-1024115IPR003340B3 DNA binding domain
PfamPF023624.7E-934112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-18245343IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-16246343IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.362253345IPR003340B3 DNA binding domain
CDDcd100171.27E-15254343No hitNo description
SMARTSM010195.5E-14256345IPR003340B3 DNA binding domain
PfamPF023623.0E-11257334IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-22506609IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-20509607IPR015300DNA-binding pseudobarrel domain
CDDcd100175.52E-18512607No hitNo description
SMARTSM010191.6E-18514609IPR003340B3 DNA binding domain
PROSITE profilePS5086312.717514609IPR003340B3 DNA binding domain
PfamPF023621.6E-15516608IPR003340B3 DNA binding domain
SMARTSM010194.6E-8688777IPR003340B3 DNA binding domain
CDDcd100172.01E-13693775No hitNo description
Gene3DG3DSA:2.40.330.104.3E-18694774IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.84E-15695775IPR015300DNA-binding pseudobarrel domain
PfamPF023622.0E-13698774IPR003340B3 DNA binding domain
PROSITE profilePS5086312.026715777IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 780 aa     Download sequence    Send to blast
MAIKQSGEGS SFRNSSTNMP QPKFYKIILS PHECSRLGIP EHFASRYCKN MQNPAYVVVP  60
SGEVWEVEVV HSEGQIWLTE GWQDFTDYYS IDSGYFLMFG YDGFSQFNVI IFDLSASEIE  120
YPYNAVHGTR HAPKKNQIEL DDSIEILEDI PQSHRGAKVA DIIDLSAVKI GQCPLGQCSK  180
RKREEDSEDD VSVDMQDVHS LSFRRKGRKT SESCRKHTQK SKIIHDNNNA AMDKERSIAY  240
QRAKAFKSNN PFIIFFMQPS YVLSPFNLSV SLKFAMKYFL ENRGDLVLRV PGKGSWSVKC  300
NFGTANAKIS WKAFVDDNKL KVGDVCVFEV IKGTKLVDVT IFPAAGSTPM NKIGGQEVPG  360
VSDSKNKIIK TDKPVPCCQP NMVLTKKLKQ QRGGSYGFNS NIKEEHGEGT EIGHSIEILG  420
HRPSGKSSKK KRLEGEAEVD ASIDVHTKSI KVEESQEDVA SPSFTRNTKK SGESSRMHLQ  480
QSKIVSGKNK KVMDKERTIA YQRAKAFKSN NPFIVSFMQP SYVSKKYILS IGLTFAKKYF  540
RKNCSNLTLR VPGRGSWSVK CCLRTSDTQI LSGWKEFVLD NKLKSGDVCV FEVIKCTELS  600
IDVTIFRAAG RTLLHKTDGE VPEVSVGKKP RIQKLFTAEN GKLRSHRKEI QMVSLQKLKK  660
NSVNALTLLP WAEWWRKTWF WLIKEQKLFH LKIHSSYSIT LSRARKFFPT KHSDLVLQVS  720
SKRTWAVKCN LGTQNAKLSS GWKEFVLDNN IKVGDVCVFE LVNRSKLLFN VIIFPAGEGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A5e-1748660721141B3 domain-containing transcription factor VRN1
4i1k_B5e-1748660721141B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755141e-41HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613656.10.0PREDICTED: B3 domain-containing protein LOC_Os12g40080-like isoform X1
TrEMBLA0A1S4BPE80.0A0A1S4BPE8_TOBAC; B3 domain-containing protein LOC_Os12g40080-like isoform X1
STRINGXP_009613656.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-34B3 family protein