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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00233g00069.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 778aa MW: 85683.3 Da PI: 6.3169 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.2 | 1.8e-20 | 112 | 167 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+k+l L +rqVk+WFqNrR+++k Peaxi162Scf00233g00069.1 112 KKRYHRHTPKQIQELEALFKECPHPDEKQRLELSKRLCLATRQVKFWFQNRRTQMK 167 688999***********************************************999 PP | |||||||
2 | START | 164.8 | 6.1e-52 | 304 | 518 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT- CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetl 76 ela++a++elvk+a+ ++ +W + e++n +e++++f++ + + +ea+r++g+v+ ++ lve+l+d++ +W e++ Peaxi162Scf00233g00069.1 304 ELALAAMDELVKMAQTDDTLWLRNIeggtEILNHEEYMRTFTPCIGmrpntFVSEASRETGMVIINSLALVETLMDSN-KWAEMF 387 5899**************************************9999********************************.****** PP S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSE CS START 77 a....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpS 150 + + +t++vissg galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d ++ + + + ++lpS Peaxi162Scf00233g00069.1 388 PcliaRTSTTNVISSGvggtrnGALQLMHAELQVLSPLVPiREVNFLRFCKQHAEGVWAVVDVSIDTIRDTSGAPTFQNYRRLPS 472 **********************************************************************998888888889999 PP EEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 151 giliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 g++ vtwveh++++++++h+l+r+l+++g+ +ga++wvatlqrqce+ Peaxi162Scf00233g00069.1 473 GCV----------VTWVEHAEYDENVVHQLYRPLISTGMGFGAQRWVATLQRQCEC 518 876..........89***************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-21 | 97 | 169 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.51E-20 | 97 | 169 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.556 | 109 | 169 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.0E-17 | 110 | 173 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.6E-18 | 112 | 167 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.64E-17 | 114 | 169 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 144 | 167 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 34.037 | 295 | 521 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.21E-25 | 297 | 518 | No hit | No description |
CDD | cd08875 | 8.95E-109 | 299 | 517 | No hit | No description |
Pfam | PF01852 | 1.4E-44 | 304 | 518 | IPR002913 | START domain |
SMART | SM00234 | 2.7E-37 | 304 | 518 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.56E-25 | 537 | 764 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 778 aa Download sequence Send to blast |
MNFGGFLDSS GDGGSARIFS NSNNNNMSIS TIPQSMSKSM FNSPGLSLAL QTGIEGQGEV 60 ARMPKNYDTY TNNSVGRRGR DEEQESRSES DNLEGASGDD QDTDEKPPKK KKKRYHRHTP 120 KQIQELEALF KECPHPDEKQ RLELSKRLCL ATRQVKFWFQ NRRTQMKTQL ERHENSLLRQ 180 ENDRLRAENM SVREALRNPM CTNCGGPAII GEISIEEQHL RIENSRLKDE LDRVCSLAGK 240 FLGRPISSMA PLALPNSSLE LGVGNNGFEV LSNVQSTMPL GTSEFGVGIS NGIEISIERS 300 MYLELALAAM DELVKMAQTD DTLWLRNIEG GTEILNHEEY MRTFTPCIGM RPNTFVSEAS 360 RETGMVIINS LALVETLMDS NKWAEMFPCL IARTSTTNVI SSGVGGTRNG ALQLMHAELQ 420 VLSPLVPIRE VNFLRFCKQH AEGVWAVVDV SIDTIRDTSG APTFQNYRRL PSGCVVTWVE 480 HAEYDENVVH QLYRPLISTG MGFGAQRWVA TLQRQCECLA ILMSSSVPSR DHTALTPSGR 540 RSMLKLAQRM TNNFCSGVCA SSIHKWNKLC IGNVDEDVRV MTRKSVDDPG EPSGIVLSAA 600 TSVWLPVSPQ RLFEFLRDER LRSEWDILSN GGPMQEMAHI AKGQDHGNCV SLLRASGTNT 660 NQSSMLILQE TCIDPAGSVV VYAPVDIPAM HVVMNGGDSA YVALLPSGFS IVPDGPGSRG 720 PKIGGPDQRV SGSLLTVAFQ ILVNSLPTAK LTVESVETVN NLISCTVQKI KAALHCES |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001234657.2 | 0.0 | cutin deficient 2 | ||||
Refseq | XP_015059298.1 | 0.0 | homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | A0A3Q7EKE6 | 0.0 | A0A3Q7EKE6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g091630.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1626 | 24 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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