PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00232g00062.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C2H2
Protein Properties Length: 444aa    MW: 49268.2 Da    PI: 7.6504
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00232g00062.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000455070323
                              ETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                              C+ C+k Fs+   L  H+r H
  Peaxi162Scf00232g00062.1 50 CEVCNKGFSSGKALGGHMRIH 70
                              *******************99 PP
2zf-C2H219.23.3e-06122142323
                               ETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                               C+ Cgk F++  +L  H+r+H
  Peaxi162Scf00232g00062.1 122 CSVCGKNFPSMKSLFGHMRSH 142
                               ********************9 PP
3zf-C2H213.10.00028301323123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ykC+ C ksF ++  L  H ++H
  Peaxi162Scf00232g00062.1 301 YKCNTCEKSFATHQALGGHRSSH 323
                               9***************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.98E-54772No hitNo description
PROSITE profilePS501579.7644875IPR007087Zinc finger, C2H2
PfamPF139127.1E-84870IPR007087Zinc finger, C2H2
SMARTSM003550.124870IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.1E-45070IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.681120142IPR007087Zinc finger, C2H2
SMARTSM003550.016120142IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.54E-9121142No hitNo description
PfamPF139123.0E-8121144IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.3E-4122142IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280122142IPR007087Zinc finger, C2H2
SuperFamilySSF576674.54E-9296323No hitNo description
PROSITE profilePS5015710.845301328IPR007087Zinc finger, C2H2
PfamPF139121.5E-7301324IPR007087Zinc finger, C2H2
SMARTSM003550.066301323IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280303323IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MVDYQDLQVG MSGTLWIQLK IEDKQVQELD HSQDIMDYEV PKNNDHTRIC EVCNKGFSSG  60
KALGGHMRIH VQAAKKLLSV GKKCKKLNPF GSRYYKKRIL LQQDDHQDNY NNDIKNQLAP  120
ICSVCGKNFP SMKSLFGHMR SHPERAWRGI QPPAPNKNSC LSSASNEIAA TTKSGDLSVP  180
GWSVKAKRGR KGTIAEASSN SSLGSRSFSF DQEKDDEEHE LHDAVGHLML LANGNKTSAD  240
QELEITNSNS LTSKAETEQV DENKKKKKKI KLRRLGSVQD LVSPVSVHHD QKLVMDTPEK  300
YKCNTCEKSF ATHQALGGHR SSHNKFRMVI QNSVEDDVVT NVATSSIIGP VEEREEAAAS  360
TSKLLVDHNK NASASQVLGV QNRCQWGSPI DHQAGPSTSQ LTSPGEVSHS IGRQILDFDL  420
NELPPQEDEI AGGRDHQYFT FFPI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0004540.0AB000454.1 Petunia hybrida taz1 mRNA for tapetum-specific zinc finger protein 1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620226.11e-140PREDICTED: zinc finger protein Xfin-like
TrEMBLP937160.0P93716_PETHY; Tapetum-specific zinc finger protein 1
STRINGXP_009620226.11e-139(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.19e-31C2H2 family protein