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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00231g01015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | bHLH | ||||||||
Protein Properties | Length: 254aa MW: 28730.2 Da PI: 4.7292 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.6 | 2.3e-13 | 55 | 97 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 Er+RR+++N++++ Lr ++P+ + K++Ka+i + A+eYI++L Peaxi162Scf00231g01015.1 55 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIEYIQEL 97 57*********************66......****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.59E-18 | 48 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.507 | 48 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.76E-12 | 51 | 102 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.7E-17 | 54 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.9E-15 | 54 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.2E-11 | 55 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MENIGDEYKN YWETNMFLQS EELTLDSYFD EAISAYYDSS SPDGAQSSMA SKNIVSERNR 60 RKKLNERLFA LRAVVPNISK MDKASIIKDA IEYIQELHEQ ERRIQAEIAE LESGRPNKKN 120 TSSLEFDQDG SFDSKPKRSK RLDQQYSYDS SGSTTRSPPS SSPVEVLELR VSSMGEKTVV 180 VSLTCSKRTD TMVKVCEIFE SLNIKIISAN ITAFSGRLLK TAFIEADEQE RDLLKMRIET 240 AIATLNDPDS PMSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 8e-14 | 53 | 97 | 9 | 53 | Transcription factor MYC2 |
5gnj_B | 8e-14 | 53 | 97 | 9 | 53 | Transcription factor MYC2 |
5gnj_E | 8e-14 | 53 | 97 | 9 | 53 | Transcription factor MYC2 |
5gnj_F | 8e-14 | 53 | 97 | 9 | 53 | Transcription factor MYC2 |
5gnj_G | 8e-14 | 53 | 97 | 9 | 53 | Transcription factor MYC2 |
5gnj_I | 8e-14 | 53 | 97 | 9 | 53 | Transcription factor MYC2 |
5gnj_M | 8e-14 | 53 | 97 | 9 | 53 | Transcription factor MYC2 |
5gnj_N | 8e-14 | 53 | 97 | 9 | 53 | Transcription factor MYC2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC253645 | 8e-68 | AC253645.3 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone slm-51e1 map 7, complete sequence. | |||
GenBank | AC253676 | 8e-68 | AC253676.4 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-50e11 map 7, complete sequence. | |||
GenBank | HG975446 | 8e-68 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. | |||
GenBank | HG975519 | 8e-68 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009603228.1 | 1e-158 | PREDICTED: transcription factor bHLH35-like isoform X2 | ||||
Refseq | XP_016449593.1 | 1e-158 | PREDICTED: transcription factor bHLH35-like isoform X2 | ||||
Swissprot | Q2HIV9 | 1e-90 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A1S3YC57 | 1e-156 | A0A1S3YC57_TOBAC; transcription factor bHLH35-like isoform X2 | ||||
STRING | XP_009603227.1 | 1e-156 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2923 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 8e-93 | bHLH family protein |