PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00216g00094.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 339aa    MW: 38465.6 Da    PI: 9.9506
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00216g00094.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.21.8e-174687243
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                               i+nk+ r+ tf kR++g+ KKA ELS+LC+++ ++i+++++
  Peaxi162Scf00216g00094.1 46 LISNKRARNLTFQKRKKGLEKKADELSILCQVKLCMILYGPK 87
                              59**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.3763787IPR002100Transcription factor, MADS-box
SMARTSM004328.3E-1637100IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-1938132IPR002100Transcription factor, MADS-box
CDDcd002661.34E-183888No hitNo description
PRINTSPR004042.6E-93959IPR002100Transcription factor, MADS-box
PfamPF003191.2E-164787IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-95974IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-97495IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEVCNYVPRL QLWLTTWHIG VSETKDKSFL GVIESLMGRR KIGMELISNK RARNLTFQKR  60
KKGLEKKADE LSILCQVKLC MILYGPKDGD KQEEATIWPD EDTARSLIDL YSARSDDDKR  120
SRTHDLTFFF NDLTRKVQIE SAKLRKKNQE AKYPTWDKRY DHFSSGRLKL LAALLGAKVE  180
AIKQRLEYLK ATQTMSLQNM SGLSFLGTKV TQQAHCLMQN TLVSKSSLPV LEIIQQHQQQ  240
PLVGPHYQMN FPGETHGVGP VTEFRSGHQM MMLNNGAIAG NSNNNVLINQ QHPMSLGVGI  300
RESNMLVTNK ISAIYNVCIA NVICNIKAGY LHLQQAKMI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019246443.15e-94PREDICTED: MADS-box protein defh21-like
TrEMBLA0A1U7XMZ25e-87A0A1U7XMZ2_NICSY; agamous-like MADS-box protein AGL80
STRINGXP_009596094.12e-90(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24572253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.16e-17M-type_MADS family protein