PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00216g00008.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 315aa    MW: 35333.7 Da    PI: 6.1757
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00216g00008.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.84e-13126173355
                               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               + h  +Er+RR+r+ ++f  + +llP++     kKl+Ka++L  A++YIk+L+
  Peaxi162Scf00216g00008.1 126 QDHVLAERKRRERLTQRFIAISTLLPNL-----KKLDKASVLGDAIKYIKQLE 173
                               56999***********************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.421123172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-11126173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-16127188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-16128190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.67E-13128177No hitNo description
SMARTSM003533.4E-14129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MDISSATWWS EMETMEMNNH SFINNNNQFN ELPFNKPQAT HQTTIFCYSN SPSANISAVA  60
KNVHFEKLNT FVKTEVPSGT TINFSSTTSL DSDFDDGQNL IQSFGFGTGD TNTQKKSYSR  120
SGLQAQDHVL AERKRRERLT QRFIAISTLL PNLKKLDKAS VLGDAIKYIK QLEEQVKTLE  180
EKAKNCKEEP VVAVKRARLI SSYEDSSSSD ENSSISTDTS LPDIEVRASD GNIMITIYCK  240
KQTGILKEIF NEVEKLNLSI NSSSVMPFGY GTTHITIIAQ MDHQFSMTPN HVANRLRAAM  300
MKLINNLEED SFVTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-12127189873Transcription factor MYC2
5gnj_B2e-12127189873Transcription factor MYC2
5gnj_E2e-12127189873Transcription factor MYC2
5gnj_F2e-12127189873Transcription factor MYC2
5gnj_G2e-12127189873Transcription factor MYC2
5gnj_I2e-12127189873Transcription factor MYC2
5gnj_M2e-12127189873Transcription factor MYC2
5gnj_N2e-12127189873Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131136ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016507543.11e-148PREDICTED: transcription factor bHLH18-like
TrEMBLA0A1S4D2J21e-146A0A1S4D2J2_TOBAC; transcription factor bHLH18-like
STRINGXP_009594425.11e-147(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45081443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-49bHLH family protein