PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00211g00239.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family NF-YA
Protein Properties Length: 296aa    MW: 33257.8 Da    PI: 10.3855
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00211g00239.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA68.41.8e-21152200258
                 CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                p++VNaKQy++Il+RR+ Rak  e        +k++lh SRh hA+rRpRg+gGrF
  Peaxi162Scf00211g00239.1 152 GPIFVNAKQYHGILRRRKFRAKEME--------KKQFLHLSRHLHAMRRPRGCGGRF 200
                               69*******************8555........7889*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.7E-23149203IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115223.183150203IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.0E-18153200IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MTQGHKDKIR KYWRVILGYG RPTTSKVHTS MTMHTIFTKG NEGIVQNTTA PWWGNLVSQS  60
MAYNEPFGHL KSASIEQPIS GKHAQKLSNV MNVISVQSPN MDYQGHFELG FGQPLICAKY  120
LYGEKCLGLF STFGSQVSDR IMLPLNLTSD EGPIFVNAKQ YHGILRRRKF RAKEMEKKQF  180
LHLSRHLHAM RRPRGCGGRF MNTRKMNGSV NGNTTDTTKT GSQNSEVLHS DISNFNSPTA  240
RRSYNSSEVT SSYSRGNVET FPIHNPRPSV HSLLDMMNTG HDILMASKWG PAADSC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016546111.11e-116PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X2
TrEMBLA0A2G3AXS31e-115A0A2G3AXS3_CAPCH; Nuclear transcription factor Y subunit A-4
STRINGPGSC0003DMT4000550611e-110(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37062347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.12e-37nuclear factor Y, subunit A2