PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peaxi162Scf00209g00932.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 184aa MW: 20017.5 Da PI: 5.7926 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.5 | 2.1e-07 | 76 | 115 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Peaxi162Scf00209g00932.1 76 RREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 115 9*****************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.258 | 64 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.0E-7 | 72 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.01E-13 | 76 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.27E-7 | 76 | 119 | No hit | No description |
Pfam | PF00010 | 1.2E-4 | 76 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.0E-14 | 77 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 184 aa Download sequence Send to blast |
MDPQATLMNN SGTFQSPPFN LAEIWNFPIN AAAAGGGSAT PYIFPSTAPD NRTRKRRGDD 60 DESVKGVSTS GNALARREKI SERMKILQDL VPGCNKVIGK ALVLDEIINY IQSLQHQVEF 120 LSMKLEAVNS STPSMEGFPA KDVGQQMFDT NAMAFASQAS REYAKGASPD WLHMQLGGGF 180 ERTT |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009776013.1 | 4e-70 | PREDICTED: transcription factor bHLH79 isoform X2 | ||||
Refseq | XP_016481157.1 | 4e-70 | PREDICTED: transcription factor bHLH79-like isoform X2 | ||||
Swissprot | Q69WS3 | 3e-49 | BH094_ORYSJ; Transcription factor BHLH094 | ||||
TrEMBL | A0A1S4AX03 | 8e-69 | A0A1S4AX03_TOBAC; transcription factor bHLH79-like isoform X2 | ||||
TrEMBL | A0A1U7WBK2 | 8e-69 | A0A1U7WBK2_NICSY; transcription factor bHLH79 isoform X2 | ||||
STRING | Solyc05g006650.2.1 | 8e-67 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1287 | 24 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G59640.1 | 1e-57 | BIG PETAL P |