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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00209g00515.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 321aa MW: 36959.9 Da PI: 4.487 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.6 | 4.3e-18 | 92 | 145 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ ++q++ Le+ Fe ++++ e++ +LAk+lgL+ rq+ +WFqNrRa++k Peaxi162Scf00209g00515.1 92 KKRRLLPNQVQFLEKSFEVDNKLEPERKVQLAKELGLQPRQIAIWFQNRRARYK 145 45578899*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 124.8 | 3.9e-40 | 91 | 182 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 ekkrrl +qv++LE+sFe ++kLeperKv+la+eLglqprq+a+WFqnrRAR+ktk+lEkdy++Lk+++d+lk++ ++L ke+e Peaxi162Scf00209g00515.1 91 EKKRRLLPNQVQFLEKSFEVDNKLEPERKVQLAKELGLQPRQIAIWFQNRRARYKTKNLEKDYDVLKASFDKLKADYDTLFKENE 175 69*********************************************************************************** PP HD-ZIP_I/II 86 eLreelk 92 +Lr+e++ Peaxi162Scf00209g00515.1 176 DLRNEVH 182 ***9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.15E-18 | 79 | 149 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.086 | 87 | 147 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-18 | 90 | 151 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.52E-17 | 92 | 148 | No hit | No description |
Pfam | PF00046 | 2.0E-15 | 92 | 145 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-19 | 95 | 154 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 6.2E-6 | 118 | 127 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 122 | 145 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.2E-6 | 127 | 143 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.8E-16 | 147 | 188 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MEVRRVNESS NMTTTTNTVL LPNEKFPPSS EVLHSLWMSN SSPSFHGPAS MVNFEDGQGE 60 MTKERPFFTQ IEKEETSNND DYDSSCFHQP EKKRRLLPNQ VQFLEKSFEV DNKLEPERKV 120 QLAKELGLQP RQIAIWFQNR RARYKTKNLE KDYDVLKASF DKLKADYDTL FKENEDLRNE 180 VHLLTEKLVR KEKGKENSEQ SAPISPIDEK EVEKAIPNVV TSDVQSMSKL VCKQEDASSA 240 KSDVVDSDSP HYTDGNHSSI YLEPADSSNI FEPEPSDFSQ DEDDNLSKSF LCFPDIGDQI 300 QASSCNLSFQ IEDQPCWFWQ Y |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 1e-110 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019230957.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT5-like | ||||
TrEMBL | A0A314KIA2 | 0.0 | A0A314KIA2_NICAT; Homeobox-leucine zipper protein hat5 | ||||
STRING | PGSC0003DMT400045471 | 1e-178 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA825 | 24 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 7e-47 | homeobox 1 |