PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00209g00226.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family Whirly
Protein Properties Length: 271aa    MW: 30323.4 Da    PI: 9.9053
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00209g00226.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly135.52.5e-421112321139
                    Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgs 85 
                               s+yk+kaal+v+++ p+f+ ldsg++k++r+G +ll++a+a+++r+ydW++kq+f+ls+te++++++l++k+sceffhdp ++  
  Peaxi162Scf00209g00226.1 111 SIYKGKAALTVEPRSPEFSPLDSGAFKISREGLVLLQFAPAAGVRQYDWSRKQVFSLSVTEIGSIISLGAKDSCEFFHDPNKGRR 195
                               7*******************************************************************************88765 PP

                    Whirly  86 neGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                                + ++ k                  v+n+l++ +es+++Pv+kaefavl s+++
  Peaxi162Scf00209g00226.1 196 YNLHLFK-----------------GVQNKLINLDESIYIPVTKAEFAVLVSAFN 232
                               5444333.................589***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.105.2E-59101254IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544477.85E-66104271IPR009044ssDNA-binding transcriptional regulator
PfamPF085367.4E-37112195IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045910Biological Processnegative regulation of DNA recombination
GO:0009508Cellular Componentplastid chromosome
GO:0009570Cellular Componentchloroplast stroma
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MLNLSLSPSP TSTGLSLNFQ NPTKTPYLSF SSSFNAIPFT NSNSRTPFSY TIKAFPKNLS  60
LTCRNSAYFE PQQQQQQQGK FYQVFHPWYE GIKNVLVLLG GSTPKVFVGY SIYKGKAALT  120
VEPRSPEFSP LDSGAFKISR EGLVLLQFAP AAGVRQYDWS RKQVFSLSVT EIGSIISLGA  180
KDSCEFFHDP NKGRRYNLHL FKGVQNKLIN LDESIYIPVT KAEFAVLVSA FNFVLPYLLG  240
WHTAVNSFKP EDASRSNNAN PRSGADFEWS R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A1e-106762708219p24: plant transcriptional regulator PBF-2
1l3a_B1e-106762708219p24: plant transcriptional regulator PBF-2
1l3a_C1e-106762708219p24: plant transcriptional regulator PBF-2
1l3a_D1e-106762708219p24: plant transcriptional regulator PBF-2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2333421e-112AF233342.1 Solanum tuberosum DNA-binding protein p24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001275155.11e-128single-stranded DNA-binding protein WHY1, chloroplastic
SwissprotQ9LL851e-129WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBLA0A0V0HSY51e-126A0A0V0HSY5_SOLCH; Putative single-stranded DNA-binding protein WHY1, chloroplastic-like
STRINGPGSC0003DMT4000454391e-127(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77312430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02740.21e-84ssDNA-binding transcriptional regulator