PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00207g01146.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | bHLH | ||||||||
Protein Properties | Length: 256aa MW: 29461.8 Da PI: 9.0362 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.8 | 9.3e-09 | 172 | 212 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++++P K++ a++L +A +Y+k L Peaxi162Scf00207g01146.1 172 ARQRRERISEKIKILQKMVPGG-----SKMDTASMLDEAANYLKFL 212 69******************95.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.008 | 163 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-14 | 168 | 231 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-13 | 169 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.54E-10 | 169 | 217 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.7E-12 | 171 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.6E-6 | 172 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MDTLDWDTMP IIRNASCLFD PIDMISSWNI CQRQEAATRL VADSFHRKNL QFCALLRSLM 60 KWSCNHLQII CKKFQEDFST GDSSFQLNSK NQPKSKKLKS ENKCPRSSNI NFQQASSSTS 120 SLDEPDSEAI AQMKEMIYRE AAFKPVACST EEVLKPKRKN VRISTDPQTV AARQRRERIS 180 EKIKILQKMV PGGSKMDTAS MLDEAANYLK FLRTQVKELE AFGYKIDPLI TYFSPLYSIP 240 FNNYPFFTQH NLDTII |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 172 | 177 | RQRRER |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016443824.1 | 1e-75 | PREDICTED: transcription factor bHLH87-like | ||||
Swissprot | Q8S3D2 | 1e-55 | BH087_ARATH; Transcription factor bHLH87 | ||||
TrEMBL | A0A1S3XVC1 | 3e-74 | A0A1S3XVC1_TOBAC; transcription factor bHLH87-like | ||||
STRING | XP_009625228.1 | 3e-74 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4350 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21330.1 | 3e-57 | bHLH family protein |
Publications ? help Back to Top | |||
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