PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00207g00636.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

FAR1

Protein Properties

Length: 447aa MW: 51213.6 Da PI: 5.3172

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00207g00636.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.3	5.4e-23	129	213	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a++++++ ++++w+v++++leH Peaxi162Scf00207g00636.1 129 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTMKEAN-----SRRKETRTGCLAMIRLRLVESNRWRVDEVKLEH 208 69**************************************99888.....8999************************* PP FAR1 86 nHela 90 nH++ Peaxi162Scf00207g00636.1 209 NHQFD 213 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-20	129	213	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.804	328	364	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.3E-5	339	366	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	5.8E-5	340	362	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MEECLGSNEQ LPEDEGCDNE VDREEVFDIR CNGIESDGDQ VLNVDAIEVE TAAGQILEAE 60 KNCEHVLDFE SSDLRENGHQ LLKFQSNGLE DRRGGDTTII DDHTCSSLGK SYPAPVAGME 120 FESYEDAYNY YNCYAKELGF AIRVKSSWTK RNSKEKRGAV LCCNCEGFKT MKEANSRRKE 180 TRTGCLAMIR LRLVESNRWR VDEVKLEHNH QFDPERVQYS KSHKKMDAGV KRKLEPAVDV 240 EVRTIKLYRT PANETLGYGS SDERAVSGQI DGSTRLKLKE EIFLKFQDEM ALMSNCSDIA 300 QIHANGPIIT YIVKERGVEG DMRDAREFEV TYDKMGIEVR CICSCFNFRG YLCRHALSVL 360 NYNGIEEIPN HYILTRWRKD FQRLFAPEAG SSIIDISNPV QRFDHLHRRA IQIVEEGMIS 420 QDHYMVAWQA FKESLNKVRL AADKHVP

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MEECLGSNEQ LPEDEGCDNE VDREEVFDIR CNGIESDGDQ VLNVDAIEVE TAAGQILEAE  60
KNCEHVLDFE SSDLRENGHQ LLKFQSNGLE DRRGGDTTII DDHTCSSLGK SYPAPVAGME  120
FESYEDAYNY YNCYAKELGF AIRVKSSWTK RNSKEKRGAV LCCNCEGFKT MKEANSRRKE  180
TRTGCLAMIR LRLVESNRWR VDEVKLEHNH QFDPERVQYS KSHKKMDAGV KRKLEPAVDV  240
EVRTIKLYRT PANETLGYGS SDERAVSGQI DGSTRLKLKE EIFLKFQDEM ALMSNCSDIA  300
QIHANGPIIT YIVKERGVEG DMRDAREFEV TYDKMGIEVR CICSCFNFRG YLCRHALSVL  360
NYNGIEEIPN HYILTRWRKD FQRLFAPEAG SSIIDISNPV QRFDHLHRRA IQIVEEGMIS  420
QDHYMVAWQA FKESLNKVRL AADKHVP

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	0.0	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009631084.1	1e-167	PREDICTED: protein FAR1-RELATED SEQUENCE 8 isoform X2
Swissprot	Q9S793	7e-58	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A2H5QDR2	1e-180	A0A2H5QDR2_CITUN; Uncharacterized protein (Fragment)
STRING	XP_009631083.1	1e-165	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	3e-60	FAR1-related sequence 8

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]