PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00207g00340.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family AP2
Protein Properties Length: 259aa    MW: 29578.8 Da    PI: 7.0694
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00207g00340.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.86.4e-09117151138
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgt 38 
                               s+y+GV +++ +grW+A+I   +   g +k+ +lg++g 
  Peaxi162Scf00207g00340.1 117 SRYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGI 151
                               79****99**********99966...3.6********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.4861782IPR001471AP2/ERF domain
SMARTSM003801.6E-72888IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-102884IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-82983IPR001471AP2/ERF domain
PfamPF008472.9E-5117151IPR001471AP2/ERF domain
SMARTSM003800.011118172IPR001471AP2/ERF domain
PROSITE profilePS510328.781118149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAFPKGNERE KVSLKTLHNN VVQSIEVWTG RYEAHLWDKN CWNETQNKKG RQGAYADEET  60
AAHAYDLAAL KYWGQDTILN FPLSTYEKEL KEMEGQSKEE YIGSLRRKSS GFSRGVSRYR  120
GVARHHHNGR WEARIGRVFG NKYLYLGTYG IRYINNPSNP QVPNLNPNPN DPSPMPATTK  180
EIKFSFHHHH NSSNTVETTV SPPCLASDTT ASYALGLFPD DIQTYFDSQY SSSFIKKNDI  240
VFGDLDSFVS TMFECELET
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019248140.11e-104PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN49e-72AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A385CI971e-135A0A385CI97_PETHY; BasalANT AP2/ERF family transcription factor
STRINGXP_009757386.11e-102(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2516922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.21e-74AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]