PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00205g00721.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 486aa    MW: 56543.5 Da    PI: 9.0987
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00205g00721.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.35.5e-1322852899
                              --..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                        B3 28 gkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                              + +ee+++  +  + g++W vkl  ++++    l++GW +F+++++L+ gD +vF+++g++ef   v++f++
  Peaxi162Scf00205g00721.1 22 LGEEEEQEHAVLRRCGKKWLVKL--KGGR----LEDGWPKFAEEHDLQLGDLLVFRHEGNMEF--EVTIFDS 85
                              34556668889999*********..7777....*************************99999..9999986 PP
2B347.92.4e-15139227698
                               ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                        B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                               ++s+ l++g l+lp +fa+++g+  ++   l+++de+ rsW+++l  + + g+ ++l+  W eF  an+Lk gD ++F+++  ++
  Peaxi162Scf00205g00721.1 139 IRSYLLTKGYLRLPTRFARKNGLFDKK-CALIIRDERQRSWNFRL--NTSHGQvHMLG-RWGEFRAANDLKLGDNIMFEVVT-NG 218
                               68999****************555433.4799*************..88888846666.9*******************876.55 PP

                               E..EEEEE- CS
                        B3  90 felvvkvfr 98 
                               +++  k+++
  Peaxi162Scf00205g00721.1 219 EKPIWKFVD 227
                               556666655 PP
3B3567.2e-18259338589
                               -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                        B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                               +++s+ l++g l+l k+fa  +g+ k++   l+++de+ rsW+++l    +++++++++GW+eF  an+Lk+gD v+F+++ + +
  Peaxi162Scf00205g00721.1 259 TVRSYCLSQGFLRLIKQFAHGNGLTKKK--SLIIRDERQRSWDLRL--VTYGSQVYIRGGWSEFHVANDLKVGDHVMFEVVTN-G 338
                               56899**************999999666..6***************..999999*************************8764.3 PP
4B352.49.6e-17398478588
                               -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                        B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                               +++++ l+ + +++pk+f+ e+g+ + ++ +++++de+ rsW+vk+  r  ++ + ++ GW eF +an LkegD v F+++++ 
  Peaxi162Scf00205g00721.1 398 TIKPYCLTYDFFYIPKEFVLENGLTN-KKCDVIIRDEWKRSWNVKI--RSFGSDVCIRVGWHEFRDANCLKEGDCVKFEVVSNG 478
                               567899999*************8885.4569***************..888889*************************88753 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.914186IPR003340B3 DNA binding domain
SuperFamilySSF1019366.67E-17592IPR015300DNA-binding pseudobarrel domain
CDDcd100171.49E-10884No hitNo description
SMARTSM010193.6E-101086IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-151387IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-92085IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-15129222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-17131226IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.73134228IPR003340B3 DNA binding domain
SMARTSM010193.6E-13135229IPR003340B3 DNA binding domain
PfamPF023623.3E-13139226IPR003340B3 DNA binding domain
CDDcd100174.38E-12139213No hitNo description
Gene3DG3DSA:2.40.330.109.2E-19253345IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-18254346IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.5E-14255348IPR003340B3 DNA binding domain
PROSITE profilePS5086312.887255348IPR003340B3 DNA binding domain
PfamPF023621.2E-15258340IPR003340B3 DNA binding domain
CDDcd100175.25E-12261333No hitNo description
Gene3DG3DSA:2.40.330.103.8E-18392481IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-17392485IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.801394486IPR003340B3 DNA binding domain
SMARTSM010196.5E-14394483IPR003340B3 DNA binding domain
PfamPF023621.5E-14398479IPR003340B3 DNA binding domain
CDDcd100178.82E-13399482No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MKVPPKKPHF FKPIQPGFKN SLGEEEEQEH AVLRRCGKKW LVKLKGGRLE DGWPKFAEEH  60
DLQLGDLLVF RHEGNMEFEV TIFDSSRCGR EYTEYLQEEE EETSKKDESN RSEIVLPSKA  120
NFHSAEAATS GQSHFEWTIR SYLLTKGYLR LPTRFARKNG LFDKKCALII RDERQRSWNF  180
RLNTSHGQVH MLGRWGEFRA ANDLKLGDNI MFEVVTNGEK PIWKFVDKRN PSIVSSRKTS  240
PNEESATYSP FVQSHFIFTV RSYCLSQGFL RLIKQFAHGN GLTKKKSLII RDERQRSWDL  300
RLVTYGSQVY IRGGWSEFHV ANDLKVGDHV MFEVVTNGEQ PIWKFHGKFS HFSNLFFAST  360
TFFFVICTMT LYCSSSKGLP CAEAATHKPF GQSHFICTIK PYCLTYDFFY IPKEFVLENG  420
LTNKKCDVII RDEWKRSWNV KIRSFGSDVC IRVGWHEFRD ANCLKEGDCV KFEVVSNGNK  480
PIWKFS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168740.10.0PREDICTED: B3 domain-containing protein REM10-like isoform X1
TrEMBLA0A1S4BWV00.0A0A1S4BWV0_TOBAC; B3 domain-containing protein REM10-like isoform X1
TrEMBLA0A1U7VE490.0A0A1U7VE49_NICSY; B3 domain-containing protein REM10-like isoform X1
STRINGXP_009766332.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.17e-36B3 family protein