PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00205g00143.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | B3 | ||||||||
Protein Properties | Length: 453aa MW: 52911 Da PI: 4.4907 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.3 | 2.1e-11 | 28 | 113 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f k l dv++s+ ++l k+ +e+ + + +sk+l ++++ g + +++++ ++ ++ y++++GWk++ ++++L+egD + + Peaxi162Scf00205g00143.1 28 FTKFLCETDVGESCSVSLLKEDVENDlpHLAPGKSKMLEFQNTCGnNNFRMEFVRSNLGDYYYFSTGWKRYRNEHKLEEGDLLFL 112 8899999****************77799888999********8887889999976777777********************9988 PP E CS B3 83 k 83 + Peaxi162Scf00205g00143.1 113 Y 113 7 PP | |||||||
2 | B3 | 35.6 | 1.6e-11 | 163 | 246 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f k l +dv++s +++ k+ ae+h + + +s++l ++d++g+ +++++ +r + g y++ +GW+++ ++++L+ D++ + Peaxi162Scf00205g00143.1 163 FTKFLCEADVGESFSVSILKEDAEDHlpRLAPDKSMMLEFQDTRGNNFSMEF-VRSNLGDYYFCTGWERYRDEHKLEYDDMLSVY 246 889999**********************88899*******************.68888999*******************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-12 | 26 | 122 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-12 | 27 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.55E-10 | 28 | 113 | No hit | No description |
SMART | SM01019 | 0.0034 | 28 | 134 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.1E-8 | 28 | 113 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-14 | 154 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.22E-12 | 161 | 248 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.96E-9 | 163 | 250 | No hit | No description |
SMART | SM01019 | 0.39 | 163 | 267 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.9E-9 | 163 | 246 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-4 | 297 | 393 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.6 | 307 | 410 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.12E-5 | 308 | 393 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MNEEEEGESK DSQENTTSVE KEYVKVVFTK FLCETDVGES CSVSLLKEDV ENDLPHLAPG 60 KSKMLEFQNT CGNNNFRMEF VRSNLGDYYY FSTGWKRYRN EHKLEEGDLL FLYQKVKQNG 120 IDDDQRYLYL IECEKEASEE RESKKQNPTQ ENTKKVENVK LVFTKFLCEA DVGESFSVSI 180 LKEDAEDHLP RLAPDKSMML EFQDTRGNNF SMEFVRSNLG DYYFCTGWER YRDEHKLEYD 240 DMLSVYKKEK QHRVDDDQQY FYIIECQKVT PDHPTKFFLT HVEFVLAKLL AALEDSSKSS 300 VKKETVLAKL LCDQDLYGNS KGLKLQKNEV EENLNERPLA RVGGKITLPL FDPIGEKLFQ 360 MELVYTDEEE YYIGFGWKEY AAEHNLLTFD SIFVNKIIVN GDVVNHRSAN FIWDKDIDDD 420 QLVNSSYYYE IIYQRVSSPP SSSSAAGENY SYF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009799396.1 | 9e-96 | PREDICTED: uncharacterized protein LOC104245480 | ||||
TrEMBL | A0A314L750 | 8e-98 | A0A314L750_NICAT; Uncharacterized protein | ||||
STRING | XP_009799396.1 | 4e-95 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16310 | 2 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 1e-07 | related to ABI3/VP1 2 |