PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00205g00143.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 453aa    MW: 52911 Da    PI: 4.4907
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00205g00143.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.32.1e-1128113183
                               EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                               f k l   dv++s+ ++l k+ +e+    + + +sk+l ++++ g + +++++  ++ ++ y++++GWk++ ++++L+egD + +
  Peaxi162Scf00205g00143.1  28 FTKFLCETDVGESCSVSLLKEDVENDlpHLAPGKSKMLEFQNTCGnNNFRMEFVRSNLGDYYYFSTGWKRYRNEHKLEEGDLLFL 112
                               8899999****************77799888999********8887889999976777777********************9988 PP

                               E CS
                        B3  83 k 83 
                               +
  Peaxi162Scf00205g00143.1 113 Y 113
                               7 PP
2B335.61.6e-11163246183
                               EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                               f k l  +dv++s  +++ k+ ae+h   + + +s++l ++d++g+ +++++ +r + g y++ +GW+++ ++++L+  D++  +
  Peaxi162Scf00205g00143.1 163 FTKFLCEADVGESFSVSILKEDAEDHlpRLAPDKSMMLEFQDTRGNNFSMEF-VRSNLGDYYFCTGWERYRDEHKLEYDDMLSVY 246
                               889999**********************88899*******************.68888999*******************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-1226122IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-1227114IPR015300DNA-binding pseudobarrel domain
CDDcd100172.55E-1028113No hitNo description
SMARTSM010190.003428134IPR003340B3 DNA binding domain
PfamPF023624.1E-828113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-14154252IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-12161248IPR015300DNA-binding pseudobarrel domain
CDDcd100171.96E-9163250No hitNo description
SMARTSM010190.39163267IPR003340B3 DNA binding domain
PfamPF023628.9E-9163246IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-4297393IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.6307410IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-5308393IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MNEEEEGESK DSQENTTSVE KEYVKVVFTK FLCETDVGES CSVSLLKEDV ENDLPHLAPG  60
KSKMLEFQNT CGNNNFRMEF VRSNLGDYYY FSTGWKRYRN EHKLEEGDLL FLYQKVKQNG  120
IDDDQRYLYL IECEKEASEE RESKKQNPTQ ENTKKVENVK LVFTKFLCEA DVGESFSVSI  180
LKEDAEDHLP RLAPDKSMML EFQDTRGNNF SMEFVRSNLG DYYFCTGWER YRDEHKLEYD  240
DMLSVYKKEK QHRVDDDQQY FYIIECQKVT PDHPTKFFLT HVEFVLAKLL AALEDSSKSS  300
VKKETVLAKL LCDQDLYGNS KGLKLQKNEV EENLNERPLA RVGGKITLPL FDPIGEKLFQ  360
MELVYTDEEE YYIGFGWKEY AAEHNLLTFD SIFVNKIIVN GDVVNHRSAN FIWDKDIDDD  420
QLVNSSYYYE IIYQRVSSPP SSSSAAGENY SYF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799396.19e-96PREDICTED: uncharacterized protein LOC104245480
TrEMBLA0A314L7508e-98A0A314L750_NICAT; Uncharacterized protein
STRINGXP_009799396.14e-95(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1631025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-07related to ABI3/VP1 2