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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00196g00118.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | bHLH | ||||||||
Protein Properties | Length: 256aa MW: 28741.8 Da PI: 8.1561 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.8 | 1.9e-13 | 54 | 100 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr+llP+ K +Ka+ L +Av+++++L Peaxi162Scf00196g00118.1 54 KSHSEAERRRRKRINGHLATLRTLLPNT-----IKTDKASLLAEAVRCVREL 100 69*************************8.....6**************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.364 | 51 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.61E-11 | 54 | 102 | No hit | No description |
Pfam | PF00010 | 9.3E-11 | 54 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-13 | 54 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-13 | 55 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-11 | 57 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00275 | 154 | 202 | No hit | No description |
SuperFamily | SSF55021 | 3.62E-5 | 159 | 232 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 9.8E-6 | 159 | 227 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MHPFSSFYDL AGSCSESYNF LHGIINTSAE MYNVESSCVS PRAMAEAKAI AANKSHSEAE 60 RRRRKRINGH LATLRTLLPN TIKTDKASLL AEAVRCVREL KKTTSELGTL SEDENTDDFN 120 YMGHNDHTTM KKFMFPSESD ELKLSYCDND SGNTLIKASI CCEDRPEIMM ELRRALSTIQ 180 GKVVRAEMAT VGGRIKCILW VQMLVSSSEN GCRDEGLGQL RRALKVVMDK SNLLQPHQNM 240 GQDLLGNKRP RLYHCS |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 1e-44 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016469430.1 | 1e-150 | PREDICTED: transcription factor bHLH30-like | ||||
TrEMBL | A0A1S3ZYB9 | 1e-149 | A0A1S3ZYB9_TOBAC; transcription factor bHLH30-like | ||||
STRING | XP_009605433.1 | 1e-149 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7283 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 1e-35 | bHLH family protein |