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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Peaxi162Scf00194g00218.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family |
MYB |
Protein Properties |
Length: 355aa MW: 40589.1 Da PI: 7.9245 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Peaxi162Scf00194g00218.1 | genome | SGN | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 57.1 | 4.1e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g W++eEde+lv+ ++++G g+W+++++ g+ R++k+c++rw +yl
Peaxi162Scf00194g00218.1 14 KGLWSPEEDEKLVKHITKYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
678*******************************************97 PP
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2 | Myb_DNA-binding | 47 | 6e-15 | 67 | 109 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
rg +++eE+ l+v++++ lG++ W+ Ia++++ gRt++++k+ w+
Peaxi162Scf00194g00218.1 67 RGTFSQEEENLIVELHAVLGNK-WSQIAARLP-GRTDNEIKNLWN 109
899*******************.*********.*********998 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 355 aa
Download sequence Send
to blast |
MGRHSCCYKQ KLRKGLWSPE EDEKLVKHIT KYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SQEEENLIVE LHAVLGNKWS QIAARLPGRT DNEIKNLWNS SIKKKLRQKG 120 IDPNTHKPLS EVENEEKASA NSNKNNEKVI SEDSNDQLNF IEAHESISKH IGIATEKSST 180 LSTMTNNMDR YPLIHETNNI VPPTHEFFTK SPHDLASYFS FQQLNNYSPN SIGLSMTNSN 240 TNNLIFNNST NSKNSHDMVS DQFNSCTMAT DPEEIKWSEY MQTPYLLSAN HHQMSQHQDL 300 YGDAKSEAQF ITQGSLNLSN TTWLHQSQQQ QSSLQTADLY NKNFQRLPAA YGQYS
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975440 | 2e-44 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
GenBank | HG975513 | 2e-44 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |