PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00193g00712.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family FAR1
Protein Properties Length: 301aa    MW: 34280.5 Da    PI: 9.1902
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00193g00712.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR127.97.9e-09611124790
                      FAR1  47 k.........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                               +          e+++r+r e r+gC a++k + + +g wev +++  H+H++ 
  Peaxi162Scf00193g00712.1  61 AkgkssklspYEERKRKRLEYRCGCMARIKFRIS-NGIWEVCEFNDMHSHPMI 112
                               0333334444589999***************999.***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.8E-662112IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MEGLNVENGL SNQEDYTVKD QQLSTKTHNV CNINKNFVFE TGMKFGSEEE SYNAYNSYAV  60
AKGKSSKLSP YEERKRKRLE YRCGCMARIK FRISNGIWEV CEFNDMHSHP MIEDNLRHFI  120
QSGRKLTDAT KNILGSMIDA AANDVDSEKI ARKYLYQANV EITIFQSKLY AEGRDKGVHK  180
FNSIIDPCQD SKDIILDPIK KKGKRKGYKR LKPNIEKERK KASQKTLKDK VGHSNEQQSF  240
STMATTVNAQ SSSMSQINSS FEFYGESGNT FTQLLTQDST LWTAGYNQSS GLNNMQSNIE  300
I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203211KRKGYKRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755193e-55HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019266793.17e-50PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2052822