PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00192g01414.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 445aa    MW: 51749.5 Da    PI: 9.9403
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00192g01414.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.31.6e-141594899
                              -HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                        B3  8 sdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                                 +k+g l lp  f+ ++ +g ++   +  +  + g++W vkl  ++++    +++GW++Fv++n+L+ g ++vFk++g++ef   
  Peaxi162Scf00192g01414.1 15 QPGFKHG-LKLPIGFL-KYlKGREN---EHAVLRRVGKKWLVKL--NGHR----FKEGWEKFVEENDLELGNILVFKHEGDMEF--E 88
                              4555665.********.55466644...5677889*********..7777....9***********************999999..9 PP

                              EEEE-S CS
                        B3 94 vkvfrk 99
                              v++f++
  Peaxi162Scf00192g01414.1 89 VTIFDS 94
                              999986 PP
2B352.96.6e-171352041789
                               E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
                        B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                               ++p +fa+e+ + +++  t+t++d + rsW++ l    ++g++++++GW+eF++ n LkegD ++F+++++ ++
  Peaxi162Scf00192g01414.1 135 SIPIQFARENRLRNKR-CTITMTD-ERRSWTFSL--FTNGGHTYFGRGWREFCSTNCLKEGDRLMFEMVSNvES 204
                               8*********666444.4999999.779******..88889999***********************9875443 PP
3B364.12.1e-20261342692
                               ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                        B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                               ++++ l++  lv+pk+fa+++++++++  t++++d + rsW++ l    +++ +++++GW+eF+ an++kegD ++F+ +++ ++
  Peaxi162Scf00192g01414.1 261 IRPYCLSTTFLVIPKQFARKNKLNNRK-CTISMRD-EQRSWTFSL--YTSGQNTYFGRGWREFCVANRVKEGDRLMFEIVSN-GE 340
                               6788899999***********999765.5*****9.679******..9999999************************8874.44 PP

                               .. CS
                        B3  91 el 92 
                               ++
  Peaxi162Scf00192g01414.1 341 TP 342
                               34 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.55E-20497IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-21497IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.449795IPR003340B3 DNA binding domain
CDDcd100174.97E-15893No hitNo description
SMARTSM010192.2E-151095IPR003340B3 DNA binding domain
PfamPF023622.9E-111894IPR003340B3 DNA binding domain
SMARTSM010198.2E-11122213IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-15132203IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.45E-15134208IPR015300DNA-binding pseudobarrel domain
CDDcd100171.23E-13135210No hitNo description
PfamPF023625.7E-15135204IPR003340B3 DNA binding domain
PROSITE profilePS5086311.561136213IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-21253341IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-20254346IPR015300DNA-binding pseudobarrel domain
CDDcd100174.86E-16255348No hitNo description
SMARTSM010197.5E-19256350IPR003340B3 DNA binding domain
PROSITE profilePS5086313.014256350IPR003340B3 DNA binding domain
PfamPF023621.9E-18261345IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MKVPPRKPHF FKPVQPGFKH GLKLPIGFLK YLKGRENEHA VLRRVGKKWL VKLNGHRFKE  60
GWEKFVEEND LELGNILVFK HEGDMEFEVT IFDSSHCERE CELPQQGVDE REEEKGVNMH  120
YIDSLFPTGY KLFQSIPIQF ARENRLRNKR CTITMTDERR SWTFSLFTNG GHTYFGRGWR  180
EFCSTNCLKE GDRLMFEMVS NVESPAFRFY GKFLIQALQL NLILNETEKP ESKIKTSVKA  240
FSKLGATKDK HLSHPHFICI IRPYCLSTTF LVIPKQFARK NKLNNRKCTI SMRDEQRSWT  300
FSLYTSGQNT YFGRGWREFC VANRVKEGDR LMFEIVSNGE TPGFHFYDLK GNAPLQPRRK  360
KTNLDVQSVS TQGLDQSLGA VFGMKKGKYV GKDSPGIREA LDKLMEQLMG NGKEPRRMAG  420
KKWLVKLNGQ QLEEGCGKFE EEHDR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016505442.11e-143PREDICTED: putative B3 domain-containing protein REM15
TrEMBLA0A1S4CW371e-141A0A1S4CW37_TOBAC; putative B3 domain-containing protein REM15
STRINGXP_009792889.11e-136(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.14e-45B3 family protein