PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00192g01413.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 71aa    MW: 8316.72 Da    PI: 10.349
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00192g01413.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.64.6e-135651780
                              E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                        B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80
                              +lpkkfa e+g+  ++++ l+++d + r W++++    ++ +++ ++ W +F+ an+L++gD +
  Peaxi162Scf00192g01413.1  5 WLPKKFAMENGLT-NKKFGLIIRDGRQRYWNFRI--YTSGAKVYVGGKWGKFCVANDLQVGDHI 65
                              59********887.56789***************..88888999******************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.884171IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-12569IPR015300DNA-binding pseudobarrel domain
PfamPF023621.0E-10565IPR003340B3 DNA binding domain
CDDcd100179.80E-10665No hitNo description
Gene3DG3DSA:2.40.330.102.2E-10669IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MKFEWLPKKF AMENGLTNKK FGLIIRDGRQ RYWNFRIYTS GAKVYVGGKW GKFCVANDLQ  60
VGDHIRCEVV T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767536.12e-24PREDICTED: B3 domain-containing protein REM10-like
RefseqXP_016504093.12e-24PREDICTED: B3 domain-containing protein REM10-like
RefseqXP_019254323.12e-24PREDICTED: putative B3 domain-containing protein REM4 isoform X1
RefseqXP_019254325.12e-24PREDICTED: putative B3 domain-containing protein REM4 isoform X1
TrEMBLA0A1S4CSL35e-23A0A1S4CSL3_TOBAC; B3 domain-containing protein REM10-like
TrEMBLA0A1U7VRG45e-23A0A1U7VRG4_NICSY; B3 domain-containing protein REM10-like
STRINGXP_009767536.19e-24(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.12e-07B3 family protein