PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00192g01213.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 264aa    MW: 30938.6 Da    PI: 9.3337
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00192g01213.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.27.9e-1518941199
                              HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                        B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                               k+g l +pk f++  +g+++e+    +  ++ ++W+vkl  ++++    +++GW eF+++++L+ g ++vF+++g+++f   v++f
  Peaxi162Scf00192g01213.1 18 IKNG-LKVPKGFLKYLDGQEHEH---AIVRRNDKEWQVKL--NGHR----FEEGWAEFAEEHDLQLGNVLVFRHEGDMQF--EVTIF 92
                              5555.999*****5558786654...5557899*******..7777....9*************************9999..99999 PP

                              -S CS
                        B3 98 rk 99
                              ++
  Peaxi162Scf00192g01213.1 93 DS 94
                              86 PP
2B357.32.8e-18137219488
                               E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
                        B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 
                                +++++ l++g l +p +fa+++g+ + ++ +l+++de+ r W++kl  + ++ r+++++GW++Fv + g+kegD ++F+ + + 
  Peaxi162Scf00192g01213.1 137 CTIRPYCLSRGFLFIPAQFANANGLTN-KKCDLIIRDERQRLWDLKL--SSGKTRVYIGNGWRKFVADVGVKEGDRIMFEIVTSg 218
                               5678999****************8875.5569***************..99999**************************76542 PP

                               S CS
                        B3  88 s 88 
                               +
  Peaxi162Scf00192g01213.1 219 E 219
                               3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.8E-22397IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-20497IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.758795IPR003340B3 DNA binding domain
CDDcd100177.20E-16893No hitNo description
SMARTSM010197.9E-161095IPR003340B3 DNA binding domain
PfamPF023625.1E-111994IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-18131219IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-18133220IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.788134231IPR003340B3 DNA binding domain
SMARTSM010193.0E-12135227IPR003340B3 DNA binding domain
PfamPF023624.4E-16138218IPR003340B3 DNA binding domain
CDDcd100171.28E-13142213No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MKVHPKKPHF FKPILPGIKN GLKVPKGFLK YLDGQEHEHA IVRRNDKEWQ VKLNGHRFEE  60
GWAEFAEEHD LQLGNVLVFR HEGDMQFEVT IFDSSHCKRS ICKKTQEAHV IVEETPKNFE  120
LKATDHHKPL RETHFECTIR PYCLSRGFLF IPAQFANANG LTNKKCDLII RDERQRLWDL  180
KLSSGKTRVY IGNGWRKFVA DVGVKEGDRI MFEIVTSGEA PQWKFKVVTD GETPTKKFQT  240
SYFFDDVFLL YPLLKYFPSE KIRN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804336.11e-105PREDICTED: B3 domain-containing protein REM10-like
TrEMBLA0A1U7YQU11e-103A0A1U7YQU1_NICSY; B3 domain-containing protein REM10-like
STRINGXP_009804336.11e-104(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.12e-29B3 family protein