PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00190g01523.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 306aa MW: 34598.1 Da PI: 6.1691 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.5 | 1.1e-18 | 143 | 197 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq +Lee F+++++++ +++ LAk+lgL rqV vWFqNrRa+ k Peaxi162Scf00190g01523.1 143 RKKLRLTKEQSIILEESFKEHSTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTK 197 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 125.3 | 2.8e-40 | 143 | 230 | 1 | 88 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 +kk+rl+keq+ +LEesF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+ Peaxi162Scf00190g01523.1 143 RKKLRLTKEQSIILEESFKEHSTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTKMKQTEVDCEFLKRCVENLTEENRRLQKEVQ 227 69*********************************************************************************** PP HD-ZIP_I/II 86 eLr 88 eLr Peaxi162Scf00190g01523.1 228 ELR 230 **8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 1.3E-29 | 3 | 113 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 7.0E-18 | 125 | 193 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.17E-18 | 133 | 200 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.216 | 139 | 199 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-14 | 141 | 203 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.8E-16 | 143 | 197 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.85E-15 | 143 | 197 | No hit | No description |
PRINTS | PR00031 | 3.1E-5 | 170 | 179 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 174 | 197 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.1E-5 | 179 | 195 | IPR000047 | Helix-turn-helix motif |
CDD | cd14686 | 0.00823 | 190 | 230 | No hit | No description |
Pfam | PF02183 | 1.8E-10 | 199 | 232 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 8.0E-24 | 199 | 242 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MMMVEKEDLG LSLSLSFAEN RTTNPMQLNL IPSLAPSTSH SPSAFNLIHK TSWTDSFPSS 60 PDRNSETCRA METRTFLKGI DVNWVADTEE EAGVSSPNST ISTVSGNKRN EREANEDNII 120 EMEMACSQGG IINSDEEDGE TCRKKLRLTK EQSIILEESF KEHSTLNPKQ KLALAKRLGL 180 RPRQVEVWFQ NRRARTKMKQ TEVDCEFLKR CVENLTEENR RLQKEVQELR GLERSPQFYM 240 QMTPPTTLTM CPSCERVASG PTNTPVNIGP HQLGPSQQQP MPFNLWATTP IPQGPLDSYP 300 LLGRQK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 191 | 199 | RRARTKMKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019228499.1 | 1e-153 | PREDICTED: homeobox-leucine zipper protein HAT4-like isoform X1 | ||||
Swissprot | P46600 | 1e-92 | HAT1_ARATH; Homeobox-leucine zipper protein HAT1 | ||||
TrEMBL | A0A314KNB1 | 1e-151 | A0A314KNB1_NICAT; Homeobox-leucine zipper protein hat4 | ||||
STRING | XP_009788263.1 | 1e-146 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1118 | 24 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17460.1 | 5e-95 | Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein |
Publications ? help Back to Top | |||
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