PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00188g00813.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | bHLH | ||||||||
Protein Properties | Length: 573aa MW: 62004.5 Da PI: 5.0833 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.4 | 6.2e-09 | 355 | 403 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Peaxi162Scf00188g00813.1 355 NSHSLAERIRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 403 58*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.76E-17 | 350 | 421 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.12E-11 | 350 | 407 | No hit | No description |
PROSITE profile | PS50888 | 15.434 | 352 | 402 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-16 | 353 | 419 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-6 | 355 | 403 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.3E-10 | 358 | 408 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 573 aa Download sequence Send to blast |
MDIASKNESE QEKGNEEVMN YQSPNVSSEW QQLSGSNLTN VSMGLISSTL PMVDSFCPSN 60 WDQPTSSQNL GFCDATIQTN HSTANAEMGL GPFRAGVDRT LGTTGWTPPS NAMLKGGIFL 120 SPAPMMLPQS LAQFPADSGF IERAARFSCF SGGNFGDMLN PFSSIPESMN PYYRGLAPMQ 180 GPQEVLASNN ELKSPSTKQH LSNVAESSKD ISLPVDQRNT EISPLKNEKK IETFARSQDE 240 VKEVGGASGN DSDEAECSGR QEEMEGAGEE SYGKDNGSKK RKRGGQDTER DRMKGAQQTP 300 AEPAKDQSEI QRGEQNPNSI ASKPGGKNGK QGSQGSDPTK EDYIHVRARR GQATNSHSLA 360 ERIRREKISE RMKFLQDLVP GCNKVTGKAV MLDEIINYVQ SLQRQVEFLS MKLATVNPRL 420 DFNIDGLLAK DILQSRAGPS SSLAFPPDMT MAYPLLHPPH PGMLQSSLPG LGIPSDAFRR 480 AINPHLPTTS GVPGDYKDPP SQAPNVWDNE LHNIVQMGLN SSAPLSSQDL SGTSMLLLSC 540 MIFVSVLEST ALLIIPNFSV LGPLPAGQMK AEP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006348631.1 | 0.0 | PREDICTED: transcription factor bHLH49-like isoform X2 | ||||
TrEMBL | M1BQK6 | 0.0 | M1BQK6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400050585 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2871 | 21 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 1e-118 | bHLH family protein |