PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00186g01113.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

FAR1

Protein Properties

Length: 294aa MW: 34323.9 Da PI: 9.4276

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00186g01113.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.1	3.3e-14	55	140	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 Yn+Y GF +r+ k++++ rn+e+t++ f Cs+e k + e+ +r+ e r+gC a+++ k + ++wev ++++ H+ Peaxi162Scf00186g01113.1 55 AYNSYDVAKGFGIRRGKKTYN-RNNEMTRYLFLCSCEEKYGKLFLF-EEMKREMLEYRCGCMARIRFKIS-IETWEVCEFNNVHS 136 5**************9999.5556*******999998888.9999*************99.9*********** PP FAR1 87 Hela 90 H+++ Peaxi162Scf00186g01113.1 137 HPMV 140 *997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.7E-11	55	140	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MENLYIQNRP IDQDQDHIVN NPEYSIGAHS VYNINKNFVF EIGMKFGSEE ESYNAYNSYD 60 VAKGFGIRRG KKTYNRNNEM TRYLFLCSCE EKYGKLFLFE EMKREMLEYR CGCMARIRFK 120 ISIETWEVCE FNNVHSHPMV EDNLRHFIQS GRKLTSATKN ILSSMVDAGV RTKKAVRYLQ 180 NEDANDADSE EIARKYLYQA KVEISNLQNR DRDMHKISSS AEPFQGSKDQ ILDPIKKKGK 240 GKGYGRLKPN IEKRRRTSRV KVRLPHEQQF FSTMAATTDT QSYLTSQMGL SFQV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	235	255	KKKGKGKGYGRLKPNIEKRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019266793.1	5e-72	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A1J6JS56	5e-74	A0A1J6JS56_NICAT; Protein far1-related sequence 5
STRING	XP_009771804.1	7e-70	(Nicotiana sylvestris)
STRING	XP_009628526.1	2e-69	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1726	9	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	2e-10	FAR1-related sequence 10