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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Peaxi162Scf00175g00918.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family |
MIKC_MADS |
Protein Properties |
Length: 285aa MW: 32824.8 Da PI: 10.17 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Peaxi162Scf00175g00918.1 | genome | SGN | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 99.5 | 1.3e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
Peaxi162Scf00175g00918.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
79***********************************************96 PP
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2 | SRF-TF | 92.3 | 2.3e-29 | 234 | 283 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
rienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gk++eyss
Peaxi162Scf00175g00918.1 234 RIENKINRQVTFSKRRGGLLKKANEISVLCDAEVALIVFSHNGKVFEYSS 283
8***********************************************96 PP
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3 | K-box | 91.1 | 2e-30 | 82 | 172 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93
+ ++++++ +qe+ kLk ++e Lq++qRh+lG dL++L k+L+qLe+qL++sl++iRs++++ +l+q++elq+ke++l e nk+
Peaxi162Scf00175g00918.1 82 QPSTDSQNIYQEYLKLKTRVEALQQSQRHMLGADLGQLGTKDLEQLERQLDSSLRQIRSTRTQNMLDQLSELQEKEQSLIEMNKS 166
567889******************************************************************************* PP
K-box 94 Lrkkle 99
Lr+k++
Peaxi162Scf00175g00918.1 167 LRMKVQ 172
***986 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50066 | 33.726 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.0E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.23E-33 | 2 | 82 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.24E-40 | 2 | 78 | No hit | No description |
PRINTS | PR00404 | 6.7E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.9E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.7E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.7E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.2E-26 | 83 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.858 | 87 | 177 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS50066 | 31.959 | 225 | 285 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.8E-40 | 225 | 284 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.61E-34 | 226 | 285 | No hit | No description |
SuperFamily | SSF55455 | 2.35E-28 | 226 | 285 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 227 | 281 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.5E-26 | 234 | 281 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 285 aa
Download sequence Send
to blast |
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 SSMSTTLEKY HRYCYGALEG SQPSTDSQNI YQEYLKLKTR VEALQQSQRH MLGADLGQLG 120 TKDLEQLERQ LDSSLRQIRS TRTQNMLDQL SELQEKEQSL IEMNKSLRMK VQYLATGTCC 180 TISTRFYRSS TWMDALRGWE LDKKSYFGKN ISGFPFLAYI LARKMGRGKV QLRRIENKIN 240 RQVTFSKRRG GLLKKANEIS VLCDAEVALI VFSHNGKVFE YSSDS
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4ox0_A | 4e-29 | 75 | 171 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_B | 4e-29 | 75 | 171 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_C | 4e-29 | 75 | 171 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_D | 4e-29 | 75 | 171 | 1 | 101 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable MADS-box transcription factor that functions with J2 and EJ2 in meristem maturation. {ECO:0000269|PubMed:28528644}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF335234 | 0.0 | AF335234.1 Petunia x hybrida MADS-box transcription factor FBP4 (FBP4) mRNA, complete cds. |