PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00175g00918.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MIKC_MADS
Protein Properties Length: 285aa    MW: 32824.8 Da    PI: 10.17
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00175g00918.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.51.3e-31959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Peaxi162Scf00175g00918.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                              79***********************************************96 PP

2SRF-TF92.32.3e-29234283251
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                               rienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gk++eyss
  Peaxi162Scf00175g00918.1 234 RIENKINRQVTFSKRRGGLLKKANEISVLCDAEVALIVFSHNGKVFEYSS 283
                               8***********************************************96 PP

3K-box91.12e-3082172999
                     K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                               + ++++++ +qe+ kLk ++e Lq++qRh+lG dL++L  k+L+qLe+qL++sl++iRs++++ +l+q++elq+ke++l e nk+
  Peaxi162Scf00175g00918.1  82 QPSTDSQNIYQEYLKLKTRVEALQQSQRHMLGADLGQLGTKDLEQLERQLDSSLRQIRSTRTQNMLDQLSELQEKEQSLIEMNKS 166
                               567889******************************************************************************* PP

                     K-box  94 Lrkkle 99 
                               Lr+k++
  Peaxi162Scf00175g00918.1 167 LRMKVQ 172
                               ***986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.726161IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-42160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.23E-33282IPR002100Transcription factor, MADS-box
CDDcd002651.24E-40278No hitNo description
PRINTSPR004046.7E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-333859IPR002100Transcription factor, MADS-box
PfamPF014864.2E-2683171IPR002487Transcription factor, K-box
PROSITE profilePS5129714.85887177IPR002487Transcription factor, K-box
PROSITE profilePS5006631.959225285IPR002100Transcription factor, MADS-box
SMARTSM004324.8E-40225284IPR002100Transcription factor, MADS-box
CDDcd002658.61E-34226285No hitNo description
SuperFamilySSF554552.35E-28226285IPR002100Transcription factor, MADS-box
PROSITE patternPS003500227281IPR002100Transcription factor, MADS-box
PfamPF003199.5E-26234281IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS  60
SSMSTTLEKY HRYCYGALEG SQPSTDSQNI YQEYLKLKTR VEALQQSQRH MLGADLGQLG  120
TKDLEQLERQ LDSSLRQIRS TRTQNMLDQL SELQEKEQSL IEMNKSLRMK VQYLATGTCC  180
TISTRFYRSS TWMDALRGWE LDKKSYFGKN ISGFPFLAYI LARKMGRGKV QLRRIENKIN  240
RQVTFSKRRG GLLKKANEIS VLCDAEVALI VFSHNGKVFE YSSDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A4e-29751711101Developmental protein SEPALLATA 3
4ox0_B4e-29751711101Developmental protein SEPALLATA 3
4ox0_C4e-29751711101Developmental protein SEPALLATA 3
4ox0_D4e-29751711101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable MADS-box transcription factor that functions with J2 and EJ2 in meristem maturation. {ECO:0000269|PubMed:28528644}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3352340.0AF335234.1 Petunia x hybrida MADS-box transcription factor FBP4 (FBP4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020547619.11e-120floral homeotic protein APETALA 1
SwissprotK4BND86e-96MADS4_SOLLC; MADS-box protein 04g005320
TrEMBLQ9ATF31e-115Q9ATF3_PETHY; MADS-box transcription factor FBP4
STRINGXP_009773223.11e-103(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.34e-82MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]