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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00174g00149.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | C2H2 | ||||||||
Protein Properties | Length: 244aa MW: 27583.1 Da PI: 6.8546 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.8 | 0.00018 | 160 | 182 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C k F+++ L H r+H Peaxi162Scf00174g00149.1 160 YQCGTCYKLFKTSQALGGHKRSH 182 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.7E-9 | 5 | 28 | No hit | No description |
Pfam | PF13912 | 3.4E-6 | 6 | 28 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.074 | 6 | 28 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.263 | 6 | 33 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 8 | 28 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.7E-9 | 155 | 182 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.0E-4 | 157 | 182 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.972 | 160 | 182 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 8.5E-8 | 160 | 182 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.4 | 160 | 182 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 162 | 182 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MSMEKHKCKL CSRKFLNGKA LGGHMRSHLM TLPPKTPPLN QDSGESSTLS LCSSEENQEV 60 LELQNKDNVS YGLREKPKKS YRMIDPEFLE DRESETESTK TGKRSKRSRK MVASDEKMKP 120 LSLFSNCSSD EDIAMCLMML SRDVWKSSSE TLEVSKVRKY QCGTCYKLFK TSQALGGHKR 180 SHLVIMSSST TTGSCSMEYS NSAKLHNGFI DLNMPAPMED EDFSQQPDFS AVSEADFQQD 240 QEHE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009591197.1 | 1e-89 | PREDICTED: zinc finger protein ZAT1-like | ||||
TrEMBL | A0A1J6IGJ4 | 2e-72 | A0A1J6IGJ4_NICAT; Zinc finger protein zat4 | ||||
STRING | XP_009591197.1 | 6e-89 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1095 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02030.1 | 9e-17 | C2H2-like zinc finger protein |