PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00171g00419.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

MYB_related

Protein Properties

Length: 470aa MW: 51257.1 Da PI: 5.5758

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00171g00419.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.7	1e-16	55	99	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++v+a k++G W+ I +++g ++t+ q++s+ qk+ Peaxi162Scf00171g00419.1 55 REKWTEEEHQRFVEALKLYGRS-WRQIEEHVG-TKTAIQIRSHAQKF 99 789***************55.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.79E-16	49	103	IPR009057	Homeodomain-like
PROSITE profile	PS51294	22.393	50	104	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.4E-16	53	102	IPR006447	Myb domain, plants
SMART	SM00717	3.8E-13	54	102	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.3E-9	54	95	IPR009057	Homeodomain-like
Pfam	PF00249	9.8E-14	55	98	IPR001005	SANT/Myb domain
CDD	cd00167	3.52E-10	57	100	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MVAEEMNQIE GARQGASSMI SSKLETVAAQ GKALNCLANE NMLKVRKPYT ITKQREKWTE 60 EEHQRFVEAL KLYGRSWRQI EEHVGTKTAI QIRSHAQKFF AKVARDSGID GDESLNAIDI 120 PPPRPKKKPL HPYPRKMVDS PVADKAVSGQ PESSPSPNAS GRDGRSPDSV LSATGSDVFE 180 YAVVEQQPSR FSPASCTTDA QTANIISAEN DESSMTSNSS TVVKIHVASK PVAPNTSPIT 240 NYGMECDLFP RGGSCSGESQ AVEAPLASIK LFGQTVLVPD ATKLKLTLGA PNSCNSLPSK 300 ATEKEINNEN LFHGFQGNQA NSQFIVAMLP GNVIPPVCWS SQYRLENNLE GVAPFPDTVS 360 WWSWYQDLLY RYISSCSQTA METAAPCQAS KDEEPQREGS STGSSVGSAS EVDDGNRSSE 420 TAESKCTTKS DKWNNIKGFV PYKRCLAERD ENSSGVVLEE RESQRVRVCS

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MVAEEMNQIE GARQGASSMI SSKLETVAAQ GKALNCLANE NMLKVRKPYT ITKQREKWTE  60
EEHQRFVEAL KLYGRSWRQI EEHVGTKTAI QIRSHAQKFF AKVARDSGID GDESLNAIDI  120
PPPRPKKKPL HPYPRKMVDS PVADKAVSGQ PESSPSPNAS GRDGRSPDSV LSATGSDVFE  180
YAVVEQQPSR FSPASCTTDA QTANIISAEN DESSMTSNSS TVVKIHVASK PVAPNTSPIT  240
NYGMECDLFP RGGSCSGESQ AVEAPLASIK LFGQTVLVPD ATKLKLTLGA PNSCNSLPSK  300
ATEKEINNEN LFHGFQGNQA NSQFIVAMLP GNVIPPVCWS SQYRLENNLE GVAPFPDTVS  360
WWSWYQDLLY RYISSCSQTA METAAPCQAS KDEEPQREGS STGSSVGSAS EVDDGNRSSE  420
TAESKCTTKS DKWNNIKGFV PYKRCLAERD ENSSGVVLEE RESQRVRVCS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019224849.1	0.0	PREDICTED: protein REVEILLE 1-like isoform X1
TrEMBL	A0A314KU97	0.0	A0A314KU97_NICAT; Protein reveille 7
STRING	XP_009768903.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7447	21	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37260.1	6e-40	MYB_related family protein