PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00171g00086.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 169aa MW: 18937.9 Da PI: 9.064 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 91.4 | 8e-29 | 9 | 61 | 5 | 57 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 Y+eCl+NhAaslG++a+DGCgEf+ +++++ +++l+CaACgCHRnFHR+ + Peaxi162Scf00171g00086.1 9 LYRECLRNHAASLGSYATDGCGEFTLDDTNSPGTNTLHCAACGCHRNFHRKVT 61 7*************************988888899****************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.6E-24 | 9 | 61 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.0E-24 | 10 | 59 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 4.0E-17 | 10 | 59 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 23.078 | 10 | 60 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-27 | 85 | 153 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.39E-16 | 87 | 151 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.1E-26 | 93 | 151 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MQGDKPNDLY RECLRNHAAS LGSYATDGCG EFTLDDTNSP GTNTLHCAAC GCHRNFHRKV 60 TYGGTNSYSN NSSRDDREII AAAELTDSPR SSKKRFRTKF TTDQKGKMLA FAEKLGWTLQ 120 RKDQENETER FCREIGVSRK VFKVWMHNHK NNSSSVSSTT GNNASSLTQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-20 | 94 | 155 | 18 | 78 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015068151.1 | 2e-97 | zinc-finger homeodomain protein 9-like | ||||
Swissprot | A2XLF4 | 5e-42 | ZHD11_ORYSI; Zinc-finger homeodomain protein 11 | ||||
Swissprot | Q10DV5 | 5e-42 | ZHD11_ORYSJ; Zinc-finger homeodomain protein 11 | ||||
TrEMBL | M1D7H0 | 3e-95 | M1D7H0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400083993 | 5e-96 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11865 | 20 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 3e-36 | homeobox protein 31 |