PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00170g01227.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | FAR1 | ||||||||
Protein Properties | Length: 2205aa MW: 245360 Da PI: 8.437 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 26 | 3e-08 | 1691 | 1767 | 3 | 89 |
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 Yn+YA GF +rk +++++++++ f +g++ ++ +e r+gCka++k k ++ wev ++ eH Peaxi162Scf00170g01227.1 1691 YNSYAVAKGFGIRKGAKTYNRNTE------FFVLVKGNPLCVPII---GKQYVKEYRCGCKARIKFKIL-NEIWEVFEFCDEH 1763 ****************99995555......777778888887766...7889999************99.9************ PP FAR1 86 nHel 89 nH++ Peaxi162Scf00170g01227.1 1764 NHPM 1767 **98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.70.10 | 9.0E-45 | 31 | 222 | IPR021109 | Aspartic peptidase domain |
SuperFamily | SSF50630 | 3.03E-74 | 37 | 423 | IPR021109 | Aspartic peptidase domain |
PROSITE profile | PS51767 | 19.823 | 44 | 416 | IPR033121 | Peptidase family A1 domain |
Pfam | PF14543 | 4.6E-38 | 44 | 222 | IPR032861 | Xylanase inhibitor, N-terminal |
CDD | cd05489 | 1.78E-120 | 49 | 419 | No hit | No description |
Gene3D | G3DSA:2.40.70.10 | 6.0E-51 | 232 | 427 | IPR021109 | Aspartic peptidase domain |
Pfam | PF14541 | 1.4E-52 | 257 | 416 | IPR032799 | Xylanase inhibitor, C-terminal |
Gene3D | G3DSA:2.40.70.10 | 7.3E-35 | 464 | 637 | IPR021109 | Aspartic peptidase domain |
SuperFamily | SSF50630 | 2.12E-62 | 470 | 840 | IPR021109 | Aspartic peptidase domain |
PROSITE profile | PS51767 | 14.169 | 477 | 832 | IPR033121 | Peptidase family A1 domain |
Pfam | PF14543 | 4.7E-25 | 477 | 637 | IPR032861 | Xylanase inhibitor, N-terminal |
Gene3D | G3DSA:2.40.70.10 | 2.2E-48 | 647 | 842 | IPR021109 | Aspartic peptidase domain |
Pfam | PF14541 | 2.3E-48 | 673 | 832 | IPR032799 | Xylanase inhibitor, C-terminal |
Gene3D | G3DSA:2.40.70.10 | 1.0E-43 | 874 | 1062 | IPR021109 | Aspartic peptidase domain |
SuperFamily | SSF50630 | 1.78E-71 | 880 | 1263 | IPR021109 | Aspartic peptidase domain |
PROSITE profile | PS51767 | 18.391 | 887 | 1257 | IPR033121 | Peptidase family A1 domain |
Pfam | PF14543 | 1.6E-35 | 887 | 1063 | IPR032861 | Xylanase inhibitor, N-terminal |
CDD | cd05489 | 5.33E-115 | 892 | 1260 | No hit | No description |
Gene3D | G3DSA:2.40.70.10 | 7.4E-47 | 1073 | 1265 | IPR021109 | Aspartic peptidase domain |
Pfam | PF14541 | 4.9E-49 | 1098 | 1257 | IPR032799 | Xylanase inhibitor, C-terminal |
Gene3D | G3DSA:2.40.70.10 | 9.9E-44 | 1277 | 1464 | IPR021109 | Aspartic peptidase domain |
SuperFamily | SSF50630 | 2.06E-65 | 1283 | 1651 | IPR021109 | Aspartic peptidase domain |
PROSITE profile | PS51767 | 14.42 | 1290 | 1663 | IPR033121 | Peptidase family A1 domain |
Pfam | PF14543 | 4.8E-38 | 1290 | 1465 | IPR032861 | Xylanase inhibitor, N-terminal |
Gene3D | G3DSA:2.40.70.10 | 4.3E-37 | 1475 | 1651 | IPR021109 | Aspartic peptidase domain |
Pfam | PF14541 | 2.4E-42 | 1500 | 1651 | IPR032799 | Xylanase inhibitor, C-terminal |
Pfam | PF03101 | 2.9E-5 | 1691 | 1767 | IPR004330 | FAR1 DNA binding domain |
Gene3D | G3DSA:2.40.70.10 | 5.0E-44 | 1801 | 1989 | IPR021109 | Aspartic peptidase domain |
SuperFamily | SSF50630 | 5.85E-76 | 1807 | 2196 | IPR021109 | Aspartic peptidase domain |
PROSITE profile | PS51767 | 19.286 | 1814 | 2189 | IPR033121 | Peptidase family A1 domain |
Pfam | PF14543 | 3.0E-37 | 1814 | 1990 | IPR032861 | Xylanase inhibitor, N-terminal |
CDD | cd05489 | 1.88E-117 | 1819 | 2192 | No hit | No description |
Gene3D | G3DSA:2.40.70.10 | 1.3E-49 | 2000 | 2200 | IPR021109 | Aspartic peptidase domain |
Pfam | PF14541 | 1.2E-49 | 2025 | 2189 | IPR032799 | Xylanase inhibitor, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 2205 aa Download sequence Send to blast |
MSSCSYYFFH FFFLLISSTC LAQTTFHPKT LFLAVKKDPS TLQYITEIHQ RTPLVPVKLA 60 VHLGSENVWV DCETGFKSST YKPARCNSKQ CTLGRTTACG DCLTENKTRP GCNNDACYNI 120 VSNPAMETFF SGGEIAEDVL SIQSVNGSTA GPVVTVPKFI FSCSPSYLTE KLGKDVKGMV 180 GFGQQSPVSL ATQLASAFRF GRKFAICLSP STTQNGVIFI GDSPYLFALG FDASQNLIYT 240 PIITYPNFFI TNRASPEYYI QVSSIRISGK TVPLNRTLLS FDENEDGGTR VSTAVPYTVL 300 EASVYNAVSK AFINEMPKDV KTVPAVKPFK TCFDSSFIGM SRLGYNAPQI ELVLHKPNVY 360 WTITGANSLV KVSESVVCLA FVERQQTWGQ AIVIGGYQMQ DNLVEFDLAR KRVGFSNSLF 420 FRQTMCSNHF YSSTVGESYS FFHFFFLLTI STCLAQTTFH PKTLFLAVKK DPSTQLYITE 480 IHQRTPLVPL KLAVHLGGES LWMDCNQGYK SSTYRPARCN SRQCNLGRST ACGDCLPDIT 540 KTRPGCNNDA CYSIVLKPAT DTNLFDRGEI AEDVLSIQSV NGSTAGPVVT VPKFIFGCAP 600 TYLAQGLGKG VKGLVGFGQQ SPASFGAQFA PSFRFSRQPY LFALGFDASQ DLIYTPIITQ 660 LNYFGIPNRG SPEYYIQVSS IRINGKIVPL NTTLLWTDEL NQAGTRITTF VPYTVLEPSI 720 YNVVSKAFIN EMPKDVKTVP AVKPFKTCFD SSFIGMSRLG YNAPQIDLVL HKPNVYWTIT 780 GANSLIKVSE TVVCLAFVER SETWGQAIII GGYQMQDNLV EFDLSRKRIG FSNSLLFRQT 840 MCTNQFYAYY FFHFFFLLII STCLAQTTFH PKTLFLAVKK DPSTLQYITE IHQRTPLVPV 900 KLAVHLGSEN VWVDCETGFK SSTYKPARCN SKQCALGRTT ACGDCLTENK TRPGCNNDAC 960 YNIVSNPAME TFFSGGEIAE DVLSIKSING STTGPIVTVQ KFIFSCSPSF LTENLGKDVK 1020 GMVGFGQQSP VSLATQLASA FRFSRQFAIC LSPEQNGIIF IGHRPYLFAL GFDASQNLIY 1080 TPIITYPNFF ITNRASPEYY IQVSSIKISG KTVPLNRTLL SFYDNDNGGT RISTAIPYTE 1140 LETSIYKVVS KAFINAMPKD VKAVSPVKPF QTCFNSSFIG MSRLGYNAPQ IDLVLHKPNV 1200 YWTITGANSL VKVSETVVCL AFVERRQTFG QAIVIGGFQM HDNLVEFDLS RRRIGFSNSL 1260 FFRQTIIAKT TFQPKTLFLT VKQDPDTLQY ITEIRQGTPL VPVKLAVHLG GESLWVDCEN 1320 GYNSSTYNPA RCHSRQCDLA RSVDCGDCWH DPVPGCNNNA CYNEIENPIM DDGMIGEVAE 1380 DVLSIRSING YIPGHVATVP RFIFSCAPSY YTQKLGNNVK GMVGFGQQSP ISLAAQFASN 1440 FRFSRKFAIC LSSSTERSGV IFIGHSPYFF SLAFDASRDL IYTPILAYPS PIYPNRSSSA 1500 YYIQVSSIRI NGKTLPLNET LLSLDANLDG GTRISTAAPY TVLEPSIYSV VSKAFVEEMP 1560 KEVEKVSPVQ PFKTCFNSTN IGMSRLGYNA PEINIVLHKP NVYWTIIGAN SLVKVSDDVT 1620 CLAFVERPLT WRNFLGQSIV IGGYQMQDNL IITLMIKIVL NWCIQCLNTN NGFDFKIGMK 1680 FNSEDESYAA YNSYAVAKGF GIRKGAKTYN RNTEFFVLVK GNPLCVPIIG KQYVKEYRCG 1740 CKARIKFKIL NEIWEVFEFC DEHNHPMLIP MSSLSYYLFH FSFLLIISTC IAITTFQPKT 1800 LFLAVKKDPS TLQYITKIHQ RTPLVPLKFA VHLGGESLWV DCEERYNSST YSPAPCHSRQ 1860 CDLARATDCG DCYQDPRLGC NENACYNDIE NPVNEANGLI GRVVEDVLSI QSINGSIPGP 1920 VATVPRFIFS CSPSFLSQNL GKNVKGMVGF GQQSPVSFAT QLASTFRFSR KFAICLSSST 1980 KRNGVIFIGH SPYFFSLAFD ASRNLIYTPM LAYPRLIYPN RPQTEYYIQV SSIRVNGKTL 2040 PINKTLLSVD ENNDGGTRIS TDVPYTVLEH SIYSVLSKAF VNEMPKEVKT VPPVQPFKTC 2100 FDSTYIGMSR LGYNAPEINF VLHKPNVYWT IIGANSLIKV SDGVICLAFV ERRREPWRKA 2160 LGQSIVIGGY QMQDNIVEFD LSRKRIGFSN SLFFQQTMCS NHNYA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3vlb_A | 1e-119 | 23 | 2204 | 1 | 413 | EDGP |
3vlb_C | 1e-119 | 23 | 2204 | 1 | 413 | EDGP |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015084670.1 | 0.0 | basic 7S globulin-like | ||||
TrEMBL | A0A3Q7HTR0 | 0.0 | A0A3Q7HTR0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g076620.1.1 | 0.0 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80010.1 | 4e-08 | FAR1-related sequence 8 |