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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Peaxi162Scf00154g00516.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family |
MIKC_MADS |
Protein Properties |
Length: 247aa MW: 28389.1 Da PI: 9.9975 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Peaxi162Scf00154g00516.1 | genome | SGN | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 99.3 | 1.5e-31 | 25 | 74 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
Peaxi162Scf00154g00516.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 74
79***********************************************8 PP
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2 | K-box | 108.8 | 6.2e-36 | 92 | 189 | 3 | 100 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87
++s+ s++ea+++++qqe+akL+++i+ +q+ +R+++Ge L+sLs ++L++Le +Lek++ ++RskKnell+++ie +qk+e e+
Peaxi162Scf00154g00516.1 92 STSTGSVSEANTQYYQQEAAKLRRQIRDIQTYNRQIVGEALSSLSPRDLKNLEGKLEKAIGRVRSKKNELLFSEIELMQKREIEM 176
4556669****************************************************************************** PP
K-box 88 qeenkaLrkklee 100
q++n++Lr+k++e
Peaxi162Scf00154g00516.1 177 QNANMYLRAKIAE 189
**********986 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50066 | 33.263 | 17 | 77 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.1E-40 | 17 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.65E-46 | 18 | 94 | No hit | No description |
SuperFamily | SSF55455 | 2.22E-33 | 18 | 93 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-33 | 19 | 39 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 19 | 73 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.3E-27 | 26 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-33 | 39 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-33 | 54 | 75 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.4E-25 | 101 | 187 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.572 | 103 | 193 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0048366 | Biological Process | leaf development |
GO:0048440 | Biological Process | carpel development |
GO:0048443 | Biological Process | stamen development |
GO:0048497 | Biological Process | maintenance of floral organ identity |
GO:0090376 | Biological Process | seed trichome differentiation |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 247 aa
Download sequence Send
to blast |
MVFPNQEFES SSSQRKSGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA 60 LIVFSSRGRL YEYANNSVRA TIDRYKKHHA DSTSTGSVSE ANTQYYQQEA AKLRRQIRDI 120 QTYNRQIVGE ALSSLSPRDL KNLEGKLEKA IGRVRSKKNE LLFSEIELMQ KREIEMQNAN 180 MYLRAKIAEV ERATQQMNLM PGGGSEYQQQ PMSSTSQPYD ARNFLPVNLL EPNPHYSRQD 240 QTALQLV
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3kov_A | 1e-20 | 18 | 102 | 1 | 88 | Myocyte-specific enhancer factor 2A |
3kov_B | 1e-20 | 18 | 102 | 1 | 88 | Myocyte-specific enhancer factor 2A |
3kov_I | 1e-20 | 18 | 102 | 1 | 88 | Myocyte-specific enhancer factor 2A |
3kov_J | 1e-20 | 18 | 102 | 1 | 88 | Myocyte-specific enhancer factor 2A |
3p57_A | 1e-20 | 18 | 102 | 1 | 88 | Myocyte-specific enhancer factor 2A |
3p57_B | 1e-20 | 18 | 102 | 1 | 88 | Myocyte-specific enhancer factor 2A |
3p57_C | 1e-20 | 18 | 102 | 1 | 88 | Myocyte-specific enhancer factor 2A |
3p57_D | 1e-20 | 18 | 102 | 1 | 88 | Myocyte-specific enhancer factor 2A |
3p57_I | 1e-20 | 18 | 102 | 1 | 88 | Myocyte-specific enhancer factor 2A |
3p57_J | 1e-20 | 18 | 102 | 1 | 88 | Myocyte-specific enhancer factor 2A |
5f28_A | 2e-20 | 18 | 102 | 2 | 89 | MEF2C |
5f28_B | 2e-20 | 18 | 102 | 2 | 89 | MEF2C |
5f28_C | 2e-20 | 18 | 102 | 2 | 89 | MEF2C |
5f28_D | 2e-20 | 18 | 102 | 2 | 89 | MEF2C |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Publications
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- Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development. Plant Mol. Biol., 2001. 45(5): p. 541-53 [PMID:11414613] - Jaillon O, et al.
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] - Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] - Grimplet J,Martínez-Zapater JM,Carmona MJ
Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]
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