PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00152g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ERF | ||||||||
Protein Properties | Length: 238aa MW: 26756 Da PI: 5.5066 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.9 | 6.9e-20 | 104 | 152 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ + +r++lg+f tae+Aa+a+++a+ +++g Peaxi162Scf00152g00009.1 104 YRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFVTAEDAARAYDRAAIEFRG 152 9*******.**********94....36************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.1E-13 | 103 | 152 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-32 | 103 | 160 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-39 | 103 | 166 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.922 | 103 | 160 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-23 | 103 | 162 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.6E-11 | 104 | 115 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.65E-23 | 104 | 160 | No hit | No description |
PRINTS | PR00367 | 1.6E-11 | 126 | 142 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MVEALQNVIT GSTTTNASLF STLENVMNYT LPLYSSPSPS TSMSSTFEPP LLRVPEETES 60 CNFCKIKGCL GCDYFGSTPS NDDSKNKKKS SINVVKKKKK KNNYRGVRQR PWGKWAAEIR 120 DPRKAARVWL GTFVTAEDAA RAYDRAAIEF RGPRAKLNFP FSDYTLTEEQ STSASEQQKE 180 PESQLLEQGN VGLASQMELS VTKDNEFWDQ LMSDNEIQRL LKMMDFSGSP ADFDFSSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-25 | 103 | 161 | 2 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-25 | 100 | 161 | 2 | 64 | ATERF1 |
3gcc_A | 1e-25 | 100 | 161 | 2 | 64 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 86 | 100 | KKKSSINVVKKKKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016446024.1 | 4e-87 | PREDICTED: ethylene-responsive transcription factor ERF109-like | ||||
Swissprot | Q9SZ06 | 5e-34 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A1S3Y1L9 | 8e-86 | A0A1S3Y1L9_TOBAC; ethylene-responsive transcription factor ERF109-like | ||||
STRING | XP_009784619.1 | 5e-82 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 5e-28 | redox responsive transcription factor 1 |
Publications ? help Back to Top | |||
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