PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00130g00326.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HSF
Protein Properties Length: 249aa    MW: 28905.5 Da    PI: 7.1492
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00130g00326.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.84.7e-35271182102
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl k+y ++ed+++++++sw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++         weF++++F
  Peaxi162Scf00130g00326.1  27 FLLKTYMLVEDPATDDVVSWNADGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATNR---------WEFSNDKF 102
                               9****************************************************************999.........******** PP

                               XXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkks 102
                               kkg+k+ll++i+r+k 
  Peaxi162Scf00130g00326.1 103 KKGEKDLLCDIRRRKA 118
                               *************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.5E-3720111IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.58E-3322116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.5E-5323116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-182750IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.5E-3227116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-186577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-187890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEVLEEEQSS ESKSLLEYVR KSSPSPFLLK TYMLVEDPAT DDVVSWNADG TAFVVWQPAE  60
FARDLLPTLF KHSNFSSFVR QLNTYGFRKV ATNRWEFSND KFKKGEKDLL CDIRRRKAWT  120
NRQQPNNSNN NNGQNQCVNS KKETDEDQRS SSTSSSSEYS VLVDENKRLK MENGVLSSEL  180
SVMKNKCKEL IDIVTMFAKN PEKEEKEKQQ DERPMLFGVR LEVQEVMERK RKRAEITETA  240
SVFLSQLCK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B2e-21251162104Putative transcription factor
5d5x_B2e-21251162104Putative transcription factor
5d5x_E2e-21251162104Putative transcription factor
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009796891.11e-148PREDICTED: heat stress transcription factor B-3-like
RefseqXP_016514635.11e-148PREDICTED: heat stress transcription factor B-3-like
SwissprotO222304e-67HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A1S4DML21e-147A0A1S4DML2_TOBAC; heat stress transcription factor B-3-like
TrEMBLA0A1U7Y4K81e-147A0A1U7Y4K8_NICSY; heat stress transcription factor B-3-like
STRINGXP_009796891.11e-148(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44232241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.11e-61heat shock transcription factor B3