PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00129g00321.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 92aa    MW: 10389.8 Da    PI: 9.3621
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00129g00321.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.58.7e-0723591854
                              HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                       HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                              +  ++L++llP+ +   +s K s + +L+++++YI++L
  Peaxi162Scf00129g00321.1 23 ELVSKLQQLLPEiR-TRRSNKASASKVLQETCNYIRNL 59
                              56689*******77.799999***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.896559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-72075IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-82178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSSRRSRQSS VGSSRISDDQ IIELVSKLQQ LLPEIRTRRS NKASASKVLQ ETCNYIRNLN  60
REVDDLSDRL SQLLSTIDAE SPEAAIIRSL LM
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019258538.13e-53PREDICTED: transcription factor PRE5-like
SwissprotQ9LJX17e-41PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A314LFI57e-52A0A314LFI5_NICAT; Transcription factor pre5
STRINGXP_009758713.11e-50(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39860.19e-29bHLH family protein