PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00129g00319.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

HD-ZIP

Protein Properties

Length: 264aa MW: 30391.9 Da PI: 7.0336

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00129g00319.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.8	7.8e-18	44	97	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Peaxi162Scf00129g00319.1 44 KKRRLNLEQVKALERSFEVANKLEPERKMQLARALGLKPRQIAIWFQNRRARWK 97 4557899**********************************************9 PP
2	HD-ZIP_I/II	131	4.6e-42	43	134	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 ekkrrl+ eqvk+LE+sFe +kLeperK++lar+Lgl+prq+a+WFqnrRAR+ktkqlEkdye Lkr+ydalk++n++L+++++ Peaxi162Scf00129g00319.1 43 EKKRRLNLEQVKALERSFEVANKLEPERKMQLARALGLKPRQIAIWFQNRRARWKTKQLEKDYEILKRQYDALKADNDSLKTQNK 127 69********************************************************************************* PP HD-ZIP_I/II 86 eLreelk 92 +L++el+ Peaxi162Scf00129g00319.1 128 KLHSELQ 134 **997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.7E-19	41	101	IPR009057	Homeodomain-like
SMART	SM00389	1.2E-16	42	103	IPR001356	Homeobox domain
PROSITE profile	PS50071	16.487	43	99	IPR001356	Homeobox domain
Pfam	PF00046	4.0E-15	44	97	IPR001356	Homeobox domain
CDD	cd00086	4.19E-15	44	100	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.0E-19	46	106	IPR009057	Homeodomain-like
PRINTS	PR00031	1.1E-5	70	79	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	74	97	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.1E-5	79	95	IPR000047	Helix-turn-helix motif
Pfam	PF02183	5.0E-16	99	138	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
VSSMLMRRSM SFSGVERCDN HQDLRVDHDE MSDDDGSSHL LGEKKRRLNL EQVKALERSF 60 EVANKLEPER KMQLARALGL KPRQIAIWFQ NRRARWKTKQ LEKDYEILKR QYDALKADND 120 SLKTQNKKLH SELQLLTLKN RESLGGTAPM INLNKENDQG SWSNGSDDNN SIDVNLGTTT 180 ITRTSSCDSP FYSNTQSNNK NVMFPVSSPM PTTSLAQFLQ SSSRQDLQCH KIDPTVPDEG 240 FCNMFTPVDD QTNYWPWPEQ QQFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	99	RRARWKTKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009624441.1	1e-155	PREDICTED: homeobox-leucine zipper protein ATHB-13-like isoform X1
Refseq	XP_016465587.1	1e-155	PREDICTED: homeobox-leucine zipper protein ATHB-13-like
TrEMBL	A0A1S3ZMJ3	1e-153	A0A1S3ZMJ3_TOBAC; homeobox-leucine zipper protein ATHB-13-like
STRING	XP_009624441.1	1e-154	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA848	24	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	5e-61	HD-ZIP family protein