PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00129g00014.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

ZF-HD

Protein Properties

Length: 374aa MW: 40802 Da PI: 8.2443

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00129g00014.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	112.1	2.9e-35	74	131	4	60
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreveee 60 v YkeClkNhAaslGghavDGCgEfmps++++ +++++lkCaACgCHRnFHRre+e++ Peaxi162Scf00129g00014.1 74 VLYKECLKNHAASLGGHAVDGCGEFMPSPSANaTDPTSLKCAACGCHRNFHRREPEDQ 131 78**************************9999******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.8E-29	74	128	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	8.0E-23	76	130	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.5E-32	76	127	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.489	76	127	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	2.87E-18	235	303	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-29	236	304	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	4.8E-25	242	299	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MDITNNNHNH NNNNTSTTTA TTHVTKTTEA ESHETQTPIR IQPVKPISFS NGVLKRHNSL 60 QHQHQLHHHH PVVVLYKECL KNHAASLGGH AVDGCGEFMP SPSANATDPT SLKCAACGCH 120 RNFHRREPED QVLVNHNTTA ALEYQPLHRH HPPPPPPPQL ALPPHNHHGG AHSTGSPINS 180 PSSPPPISSA YYPASAPHML LALSTGGGLS APPPPPPDSN NINNLNQNLI SPVQFSSNPN 240 SRKRFRTKFT QNQKERMLEF AERVGWKIQK RDEDVINEFC RNIGVEKGVL KVWMHNNKNT 300 FGKKSDAVNS NSNVAATVIH NINVNTSNGN GFGHVDPTTT ALEFHLHHES STDKNDDSVS 360 AHNVVGTNGS SSSS

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MDITNNNHNH NNNNTSTTTA TTHVTKTTEA ESHETQTPIR IQPVKPISFS NGVLKRHNSL  60
QHQHQLHHHH PVVVLYKECL KNHAASLGGH AVDGCGEFMP SPSANATDPT SLKCAACGCH  120
RNFHRREPED QVLVNHNTTA ALEYQPLHRH HPPPPPPPQL ALPPHNHHGG AHSTGSPINS  180
PSSPPPISSA YYPASAPHML LALSTGGGLS APPPPPPDSN NINNLNQNLI SPVQFSSNPN  240
SRKRFRTKFT QNQKERMLEF AERVGWKIQK RDEDVINEFC RNIGVEKGVL KVWMHNNKNT  300
FGKKSDAVNS NSNVAATVIH NINVNTSNGN GFGHVDPTTT ALEFHLHHES STDKNDDSVS  360
AHNVVGTNGS SSSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-21	241	300	16	75	ZF-HD homeobox family protein
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009620291.1	1e-114	PREDICTED: zinc-finger homeodomain protein 9-like
TrEMBL	A0A1S4B4C9	1e-110	A0A1S4B4C9_TOBAC; zinc-finger homeodomain protein 9-like
STRING	XP_009620291.1	1e-113	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1088	24	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15210.1	9e-36	homeobox protein 30