PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00128g01749.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | CO-like | ||||||||
Protein Properties | Length: 467aa MW: 51380.1 Da PI: 6.6766 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.6 | 9.2e-07 | 11 | 51 | 3 | 37 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 r C+ ++++ + l+C+ ++ lC C ++ H+ H Peaxi162Scf00128g01749.1 11 SRPCDFCNQQIAVLYCRADSAKLCLFCDQHVHSAnalskkH 51 678***************************99544555555 PP | |||||||
2 | zf-B_box | 24.6 | 5.1e-08 | 54 | 98 | 3 | 41 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C++++++++++ C +++ lC++C H + H+++p Peaxi162Scf00128g01749.1 54 SQICDNCGSEPVSIRCATDNLVLCQECDWDAHGScvvsgaHDRTP 98 579*************************99994488888888877 PP | |||||||
3 | CCT | 62.2 | 1.7e-21 | 419 | 462 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+ktR+++++irYesRKa+A++R+RvKGrFvk++ Peaxi162Scf00128g01749.1 419 RGNAMQRYKEKKKTRRYDRHIRYESRKARADTRKRVKGRFVKAN 462 7789**************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 3.4E-11 | 9 | 56 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.513 | 9 | 56 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.35E-7 | 12 | 44 | No hit | No description |
PROSITE profile | PS50119 | 9.698 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 8.0E-6 | 55 | 98 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.58E-6 | 56 | 99 | No hit | No description |
SMART | SM00336 | 1.3 | 57 | 99 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 14.773 | 419 | 461 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.2E-15 | 419 | 461 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MSSECQRTGE SRPCDFCNQQ IAVLYCRADS AKLCLFCDQH VHSANALSKK HLRSQICDNC 60 GSEPVSIRCA TDNLVLCQEC DWDAHGSCVV SGAHDRTPVE GFTGCPCASE LASAWGLDIE 120 AKNPPPPQSN STNWNGFFDH PSNWMCKDVI PPPSILLQDL MVPNANNHNN NCGFELSISR 180 KQNPTCGKQK QVILKQLVEL FKRDLADGIG SGGEDLVPRT PNGSSDNWQE NVSLTDGGGG 240 GGSVTQQVEQ PQQPQNVPFT SLLMMQTPHN PKAEDRIVSW SGNSYDQNTQ IWDFNLGQLR 300 SHEQSSSMEA DYSESDMAYM MKSYGELIKG TSLAASKGLE LSVINCSVAH EDTTGFSNCS 360 NNRGGSQGPA TSESNNLPRI KHSSDSCYAK DLNFSEQSII VAGENSGTEI LKADMAKHRG 420 NAMQRYKEKK KTRRYDRHIR YESRKARADT RKRVKGRFVK ANDAPDG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 1e-89 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. | |||
GenBank | HG975517 | 1e-89 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009631919.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 14-like | ||||
Refseq | XP_009631920.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 14-like | ||||
TrEMBL | A0A1S4CFW6 | 0.0 | A0A1S4CFW6_TOBAC; zinc finger protein CONSTANS-LIKE 14-like | ||||
TrEMBL | A0A1U7Y913 | 0.0 | A0A1U7Y913_NICSY; zinc finger protein CONSTANS-LIKE 14-like | ||||
STRING | XP_009631919.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6703 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33500.1 | 1e-100 | B-box type zinc finger protein with CCT domain |