PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

Trihelix

Protein Properties

Length: 387aa MW: 44243.3 Da PI: 6.4596

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00128g00824.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	74.3	2e-23	75	157	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e+++Li rre+++ ++++k++k+lW+++s kmre+gf rsp++C++kw+nl k++kk k +++ ++s+ +++y +++e Peaxi162Scf00128g00824.1 75 WVQEETRTLISQRRELDSLFNTSKSNKHLWDQISLKMREKGFDRSPTMCTDKWRNLLKEFKKAKCNQEL--NGSVVKMSYHKEIE 157 ***************************************************************999988..46677899988887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.2E-4	65	137	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.293	67	131	IPR017877	Myb-like domain
SMART	SM00717	1.6E-4	71	133	IPR001005	SANT/Myb domain
CDD	cd12203	2.84E-27	73	138	No hit	No description
Pfam	PF13837	2.1E-17	74	158	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MYMSEKPQNS INLLYNDQEN SNTNMIIQVS TPPPNTHHSQ QPHHPPHHLN SDTTSSGGED 60 NINSVKGPKK RAETWVQEET RTLISQRREL DSLFNTSKSN KHLWDQISLK MREKGFDRSP 120 TMCTDKWRNL LKEFKKAKCN QELNGSVVKM SYHKEIEELL RDRNKNGGGF KNSGLKVDAF 180 MQFSDKGLDD TDITFGPVEE NGRPTLNLER QLDHDGHPLA ITAADAVTAS GVSPWNWRET 240 PGNGEQSNST EGRVISVKWG DYTKRIGIDG SADAIKEAIK STFRLRTNRA FWLEDEDNIV 300 RTIDRDMPLR SYTLHVDEGL TIKVCMYEEA EHLPVHTEDK TFYTAADFRD FLSHRGWTCL 360 REYNGYRHVD IMDELCPGAV YRGVNLG

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MYMSEKPQNS INLLYNDQEN SNTNMIIQVS TPPPNTHHSQ QPHHPPHHLN SDTTSSGGED  60
NINSVKGPKK RAETWVQEET RTLISQRREL DSLFNTSKSN KHLWDQISLK MREKGFDRSP  120
TMCTDKWRNL LKEFKKAKCN QELNGSVVKM SYHKEIEELL RDRNKNGGGF KNSGLKVDAF  180
MQFSDKGLDD TDITFGPVEE NGRPTLNLER QLDHDGHPLA ITAADAVTAS GVSPWNWRET  240
PGNGEQSNST EGRVISVKWG DYTKRIGIDG SADAIKEAIK STFRLRTNRA FWLEDEDNIV  300
RTIDRDMPLR SYTLHVDEGL TIKVCMYEEA EHLPVHTEDK TFYTAADFRD FLSHRGWTCL  360
REYNGYRHVD IMDELCPGAV YRGVNLG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	1e-39	69	155	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	S46942	0.0	S46942.1 Box II Factor [tobacco, mRNA Partial, 1506 nt].
GenBank	TOBB2F	0.0	M96432.1 Nicotiana tabacum DNA-binding protein (B2F) gene, 3' end.
GenBank	TOBGT1A	0.0	M93436.2 Nicotiana tabacum DNA-binding protein (GT-1a) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016434047.1	0.0	PREDICTED: trihelix transcription factor GT-4-like
Swissprot	Q9LU92	1e-159	TGT4_ARATH; Trihelix transcription factor GT-4
TrEMBL	Q43326	0.0	Q43326_TOBAC; Box II Factor (Fragment)
STRING	XP_009784713.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5113	21	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25990.1	1e-162	Trihelix family protein