PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00123g01015.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 595aa    MW: 67411.6 Da    PI: 8.204
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00123g01015.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.71.8e-12311091498
                               T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                        B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                                rl++p +fa+++ + + ++   + le ++g+ Wev++    + ++++l+kGW++F +   +  g f++F ++g s+f  +v++f
  Peaxi162Scf00123g01015.1  31 TRLSIPVDFASRYcE-NIQN--PVYLEVPDGEIWEVEV--VHSESQIWLAKGWQDFSDYYSISCGHFLMFGYNGCSRF--NVTIF 108
                               469**********63.4234..5***************..888888*************************9886666..99999 PP

                               - CS
                        B3  98 r 98 
                               +
  Peaxi162Scf00123g01015.1 109 D 109
                               7 PP
2B352.68.4e-17258338488
                               E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                        B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                                + ps+v+k   l +p kfa+++ ++  + ++l l+ +   sW+vk+ ++ ++ r  + +GWkeFv +n+Lk gD+++F++++ +
  Peaxi162Scf00123g01015.1 258 FMQPSYVFKPYSLFVPVKFARKYILE--NCRDLLLRVPGRGSWSVKCAFETTKAR--IHSGWKEFVLDNKLKFGDVCIFEVIKGT 338
                               6789*******************766..4569***************88777766..99*********************88643 PP
3B346.85.4e-155095911097
                               HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                        B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                               +++++ l++pk  a++    ++++  l+++ ++ rsW++k+  + +++     +GWk+Fv +n +k+gD++vF+ + rse +++v
  Peaxi162Scf00123g01015.1 509 AFSED-LTIPKAIASKLF--PARHNYLVVQVPNKRSWDLKC--TVGPKNAKVVSGWKKFVLDNSIKVGDVCVFEQVTRSELSFNV 588
                               55565.9*******9886..556779***************..88888878889********************88778888888 PP

                               EEE CS
                        B3  95 kvf 97 
                                +f
  Peaxi162Scf00123g01015.1 589 IIF 591
                               777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-1914111IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-1914111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.49118111IPR003340B3 DNA binding domain
CDDcd100171.36E-1318109No hitNo description
SMARTSM010192.3E-1020111IPR003340B3 DNA binding domain
PfamPF023624.9E-931109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-21247346IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-20248347IPR015300DNA-binding pseudobarrel domain
CDDcd100171.02E-18253347No hitNo description
SMARTSM010193.4E-14254349IPR003340B3 DNA binding domain
PROSITE profilePS5086313.634255349IPR003340B3 DNA binding domain
PfamPF023623.0E-14257338IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-20483591IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.59E-18484592IPR015300DNA-binding pseudobarrel domain
CDDcd100174.79E-17489592No hitNo description
PROSITE profilePS5086312.083499594IPR003340B3 DNA binding domain
SMARTSM010191.5E-10500594IPR003340B3 DNA binding domain
PfamPF023622.5E-13510592IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MANKQTGEGN SCSNMPQPMF YKIIMSPHEC TRLSIPVDFA SRYCENIQNP VYLEVPDGEI  60
WEVEVVHSES QIWLAKGWQD FSDYYSISCG HFLMFGYNGC SRFNVTIFDM SASEIEYPYN  120
AAHGTHHAQE RNQIELDDSI KISEDVLRNH RGKEKISDMV EDSIENTGKC PLGQSRKRHR  180
EEEDSEDDDS VYMLTERMEV EKSEEDVASP SFTKSGEGSG VHQQQCKIVM MTKRHKESSI  240
AYQRAKTFKS ENPFILSFMQ PSYVFKPYSL FVPVKFARKY ILENCRDLLL RVPGRGSWSV  300
KCAFETTKAR IHSGWKEFVL DNKLKFGDVC IFEVIKGTKL IDVTIFPAAE STSMHKISGR  360
KVPEVSDNSA PCSQSKIVHT KKLKQRRGGS YGLNSKNREE CGEGTEAEHP VEILVHCPLG  420
QGSKSKRQQE EAQEHEASPS STRKTKKSRG SCRAHKQQSK IVSAKSEMIM EKESAIAYQR  480
AKAFTSDNPF FICSMRPSYI SGASLVRYAF SEDLTIPKAI ASKLFPARHN YLVVQVPNKR  540
SWDLKCTVGP KNAKVVSGWK KFVLDNSIKV GDVCVFEQVT RSELSFNVII FPAAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1523659521144B3 domain-containing transcription factor VRN1
4i1k_B2e-1523659521144B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019230742.10.0PREDICTED: uncharacterized protein LOC109211634 isoform X3
TrEMBLA0A1J6IMU60.0A0A1J6IMU6_NICAT; B3 domain-containing transcription factor vrn1
STRINGXP_009760928.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-39B3 family protein