PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00123g00214.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

ARF

Protein Properties

Length: 694aa MW: 76384.6 Da PI: 7.1014

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00123g00214.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.3	1.4e-23	121	222	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD Peaxi162Scf00123g00214.1 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGD 203 89**************************996555555..89************************************** PP EEEEEE-SSSEE..EEEEE-S CS B3 79 fvvFkldgrsefelvvkvfrk 99 ++vF + +++ l+v+++r+ Peaxi162Scf00123g00214.1 204 SIVFL--RAENGDLCVGIRRA 222 *..4488999**997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.0E-38	112	225	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.92E-29	114	224	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.07E-21	120	221	No hit	No description
PROSITE profile	PS50863	13.112	121	223	IPR003340	B3 DNA binding domain
SMART	SM01019	1.7E-21	121	223	IPR003340	B3 DNA binding domain
Pfam	PF02362	8.7E-22	121	222	IPR003340	B3 DNA binding domain
Pfam	PF06507	1.0E-32	287	370	IPR010525	Auxin response factor
PROSITE profile	PS51745	17.752	606	686	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009725	Biological Process	response to hormone
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence Send to blast
MITFMDSKDK VKELEKCLDS QLWHACAGSM VQMPPVSSKV FYFPQGHAEH ACGNVDFRSS 60 IRIPSYIPCK VSAIKFMADP ETDEVFSKIR LIPVGRNEIE FDDDGVVGMN GSDNQDKPTS 120 FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGET WKFRHIYRGT 180 PRRHLLTTGW STFVNHKKLV AGDSIVFLRA ENGDLCVGIR RAKRGIGGGP ETSSGWNPAG 240 GNCMVPYGGF SSFLRDDENK LMRNGNGSIS GSLMSKGKVK AESVVEAVNL AASGQPFEVI 300 YYPRASTPEF CVKASLVKTA LQIRWCSGMR FKMPFETEDS SRISWFMGTI SSVQVADPIR 360 WPDSPWRLLQ VTWDEPDLLQ NVKRVSPWLV ELVSNMPTIH LSPFSPPRKK LRLPQHPDFP 420 LDGHLPMPAF SGNHHLLGPN SPFGCLPDNT PAGMQGARHA QYGLSLSDHH LHKLQSSFFP 480 VGFPPLDQTA TPPRPLNSPM IRKPCNGENI SCLLTMGNST HTTKKSDIGK APQLVLFGQP 540 ILTEQQISLS CSGDTVSTVR TGNSSSDGNA DKIGNVSDGS GSALNQRGLT ERSPCDTFQS 600 EPNNEIGQCK VFMESEDVGR TLDLSLLGSY DELCRKLASM FGIDNLEMLN HVLYRDLTGT 660 VKQLGDEPFS DFMRTARRLT ILTDSSSDNV GIRE

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence Send to blast

MITFMDSKDK VKELEKCLDS QLWHACAGSM VQMPPVSSKV FYFPQGHAEH ACGNVDFRSS  60
IRIPSYIPCK VSAIKFMADP ETDEVFSKIR LIPVGRNEIE FDDDGVVGMN GSDNQDKPTS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGET WKFRHIYRGT  180
PRRHLLTTGW STFVNHKKLV AGDSIVFLRA ENGDLCVGIR RAKRGIGGGP ETSSGWNPAG  240
GNCMVPYGGF SSFLRDDENK LMRNGNGSIS GSLMSKGKVK AESVVEAVNL AASGQPFEVI  300
YYPRASTPEF CVKASLVKTA LQIRWCSGMR FKMPFETEDS SRISWFMGTI SSVQVADPIR  360
WPDSPWRLLQ VTWDEPDLLQ NVKRVSPWLV ELVSNMPTIH LSPFSPPRKK LRLPQHPDFP  420
LDGHLPMPAF SGNHHLLGPN SPFGCLPDNT PAGMQGARHA QYGLSLSDHH LHKLQSSFFP  480
VGFPPLDQTA TPPRPLNSPM IRKPCNGENI SCLLTMGNST HTTKKSDIGK APQLVLFGQP  540
ILTEQQISLS CSGDTVSTVR TGNSSSDGNA DKIGNVSDGS GSALNQRGLT ERSPCDTFQS  600
EPNNEIGQCK VFMESEDVGR TLDLSLLGSY DELCRKLASM FGIDNLEMLN HVLYRDLTGT  660
VKQLGDEPFS DFMRTARRLT ILTDSSSDNV GIRE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldu_A	2e-80	8	391	41	388	Auxin response factor 5
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	0.0	HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBank	HG975521	0.0	HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004246657.1	0.0	auxin response factor 18-like isoform X1
Refseq	XP_015088546.1	0.0	auxin response factor 18-like
Swissprot	Q653H7	0.0	ARFR_ORYSJ; Auxin response factor 18
TrEMBL	A0A2G2VZR8	0.0	A0A2G2VZR8_CAPBA; Auxin response factor
TrEMBL	A0A2G3BJ95	0.0	A0A2G3BJ95_CAPCH; Auxin response factor
STRING	Solyc09g007810.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA592	24	115

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	auxin response factor 16

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Huang J,Li Z,Zhao D Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice. Sci Rep, 2016. 6: p. 29938 [PMID:27444058]