PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00116g00083.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family TALE
Protein Properties Length: 427aa    MW: 47180.3 Da    PI: 5.6811
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00116g00083.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.68.5e-083764092154
                               HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                  Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                               k +yp++e++++L +++gL+ +q+ +WF N+R +
  Peaxi162Scf00116g00083.1 376 KWPYPTEEDKAKLVQETGLQLKQINNWFINQRKR 409
                               569*****************************87 PP
2ELK27.76.4e-10330351122
                       ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                               ELKh+L+++Y+++L+++++E++
  Peaxi162Scf00116g00083.1 330 ELKHELKQGYKEKLVDIREEIL 351
                               9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.1E-16146190IPR005540KNOX1
PfamPF037903.0E-16148189IPR005540KNOX1
SMARTSM012562.3E-15183231IPR005541KNOX2
PfamPF037912.7E-12192230IPR005541KNOX2
PROSITE profilePS5121310.144330350IPR005539ELK domain
PfamPF037892.2E-6330351IPR005539ELK domain
SMARTSM011889.2E-4330351IPR005539ELK domain
PROSITE profilePS5007111.742350413IPR001356Homeobox domain
SMARTSM003891.8E-11352417IPR001356Homeobox domain
SuperFamilySSF466894.28E-16352416IPR009057Homeodomain-like
CDDcd000861.01E-11353414No hitNo description
Gene3DG3DSA:1.10.10.603.2E-25357414IPR009057Homeodomain-like
PfamPF059201.1E-17370409IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MDMQHFSDEN SGVLRSILPE QLAQSSPEVK PMEHQHQPPT WLNSAILRQE SQYAGTGARS  60
SGAGENNFLN LHSNSESSNQ WLSRSILQRN VSDVHQASND LKNDDDNNAG GGQLAESEVV  120
GGGGGGGGGS SSGTAAADGI VNWQNAGYKA EMLSHPLFEQ LLSAHVACLR IATPVDQLPR  180
IDAQLAQSQQ THYVLLLCSF KEQLQQHVRV HAMEAVMACW EIEQSLQSLT GDDPITHFVT  240
IFHCLGSIDL KELDLDKSGF HGTGDVSEKD KGRVSPGEGT GATMSDDEDD QVDSDANLFD  300
GSLDGHDSMG FGPLIPTESE RSLMERVRQE LKHELKQGYK EKLVDIREEI LRKRRAGKLP  360
GDTTSVLKAW WQSHAKWPYP TEEDKAKLVQ ETGLQLKQIN NWFINQRKRN WHSNPSSSTA  420
LKSKRKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A6e-13353417872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1406426RKRNWHSNPSSSTALKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0047971e-178AB004797.1 Nicotiana tabacum NTH23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019248511.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X1
RefseqXP_019248514.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X2
SwissprotP480001e-166KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A1J6IVC50.0A0A1J6IVC5_NICAT; Homeobox protein knotted-1-like 3
STRINGXP_009618001.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-157KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]