PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00115g01228.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB_related | ||||||||
Protein Properties | Length: 568aa MW: 64205.7 Da PI: 6.2097 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.9 | 2.1e-07 | 441 | 490 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH.HHT..TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar.tmg..kgRtlkqcksrwqky 47 r+ W+t E ++lv++v ++G g+W+ I + ++g +R+ ++k++w+++ Peaxi162Scf00115g01228.1 441 RNCWSTPEVLKLVEGVSKYGVGRWHGIKSvYFGssVHRSSTNLKDKWRNL 490 789************************762566***************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.191 | 436 | 495 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-10 | 436 | 498 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-8 | 440 | 493 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-5 | 441 | 490 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.34E-13 | 443 | 501 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 4.52E-15 | 444 | 492 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 568 aa Download sequence Send to blast |
EEVEQKSKMQ TASDSLEYSL KTPNASAMIF QHEPDQVVGA ASVYFASEEE AIGVEYLLAE 60 PVHDDIIDTL LDRNTCTFNV PKSYYLTEFS SKEPALTECG HGNSLINLSY VNQMAPWSGS 120 VSDGARQGSL TEEDKTRERF LDGLSNGCDE NYCCISCEDY LLDIELEEET PTLNDVTKDI 180 SCIGDGYLED QLADLDGRNY GTDVLKLSDA STSSDHDALP FDDVSTDKLL KVFRKMSGWK 240 NQDMRDKNFN FPKCSPESSE NEGDKVPPAS YQNLLTASTA FPSVFNFRRM PRVQHVKRRE 300 HIRWSFYKCL SSAAGETQFD CPDKWNSKTE PALPVEDRLI RRKVSEVQIK RSFRPSCVEL 360 SYFLPAWDVH SMLHGQSWCC PIQGHLSEDH RVNRAVDSDI RPAEAQVDPS GSLLDQSSDS 420 TSEDDWTIGT ETHRCNRKRK RNCWSTPEVL KLVEGVSKYG VGRWHGIKSV YFGSSVHRSS 480 TNLKDKWRNL VKASCRRSHK QRGVDAKPKR GQPSIPHHVL NRVRELAVIH PHSKLHRARV 540 LPTVFVASSS GVESDNRCFS VKDLELKY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006340203.1 | 0.0 | PREDICTED: uncharacterized protein LOC102591958 isoform X1 | ||||
TrEMBL | A0A1U8EXU8 | 0.0 | A0A1U8EXU8_CAPAN; uncharacterized protein LOC107848477 isoform X1 | ||||
STRING | PGSC0003DMT400020790 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13424 | 12 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 1e-19 | TRF-like 6 |